Salvia splendens (scarlet sage): 121793414
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Entry
121793414 CDS
T07627
Name
(RefSeq) small nuclear ribonucleoprotein SmD3b-like
KO
K11088
small nuclear ribonucleoprotein D3
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121793414
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121793414
03041 Spliceosome [BR:
sspl03041
]
121793414
03032 DNA replication proteins [BR:
sspl03032
]
121793414
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
121793414
Spliceosome [BR:
sspl03041
]
Complex A
U1 snRNP components
Sm proteins
121793414
U2 snRNP components
121793414
Complex B
U1 snRNP components
121793414
U4/U6.U5 tri-snRNP components
121793414
Complex C
U2 snRNP components
121793414
DNA replication proteins [BR:
sspl03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
121793414
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
121793414
NCBI-ProteinID:
XP_042047356
LinkDB
All DBs
Position
3:2356148..2358278
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AA seq
132 aa
AA seq
DB search
MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSLL
EHVFIRGSKVRFMVIPDMLKNAPMFKRLEARIKGKGSALGVGRGRAVAMRARAQAAGRGA
PPGRGAAPPARR
NT seq
399 nt
NT seq
+upstream
nt +downstream
nt
atgagtcggagcttaggaattccggtgaagctactgcacgaggcgtcggggcatgtggtg
acggtggagctgaagagcggcgagctctatcgaggaagcatgattgagtgcgaggataac
tggaattgccagctcgaaaacattacctacactgctaaggatgggaaggtctcactacta
gagcatgttttcatcagaggcagcaaagtcaggttcatggtaattccggatatgcttaag
aacgctccgatgtttaaacgcttggaagctaggatcaagggtaagggctcagctcttgga
gttggacgtggccgtgcagtagctatgcgagctagagcccaggctgctggtcgtggagct
ccccctggtagaggtgctgctccacctgcgcggaggtga
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