Salvia splendens (scarlet sage): 121794215
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Entry
121794215 CDS
T07627
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121794215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121794215
03009 Ribosome biogenesis [BR:
sspl03009
]
121794215
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121794215
Spliceosome [BR:
sspl03041
]
Complex A
U1 snRNP components
U1 related factors
121794215
Complex B
121794215
Ribosome biogenesis [BR:
sspl03009
]
Eukaryotic type
Pre-60S particles
Helicases
121794215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
121794215
NCBI-ProteinID:
XP_042048220
LinkDB
All DBs
Position
3:1381905..1386009
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AA seq
507 aa
AA seq
DB search
MSRYDSRSADPGSYRERRGDSGFGYKKEHDSSYRSSSSSKRDSDGGAETAPRKSELDGLT
PFEKNFYVETQSIAAMSESDVEEYRRRREITVEGKDVPKPVKSFNDVGFPEYVLQEIEKA
GFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV
LAPTRELAVQIQQEATKFGASSKIKNTCIYGGVPKGPQVRDLQKGVEVVIATPGRLIDML
ESHHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLYWSATWPKEVEQLARR
SLFNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGC
DQTTRQLRMDGWPALSIHGDKSQAERDWVLSEFRAGKSPIMTATDVAARGLDVKDVKYVI
NYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKDLINILEEAGQKVSPELVSM
GRGAPPPPAYGGSRDRGRGYGGGRARN
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgagccgctacgacagccgctctgccgacccaggctcttaccgtgagcgccgcggggat
tcggggtttggttataagaaagaacacgacagcagttatcggtcctcgtcttcgtcgaag
agagactccgatggcggggcggagactgcgccgcggaagtcggagttggatggactgacg
ccgttcgagaagaatttttatgtggagactcagtctattgccgccatgtcggagagtgac
gtggaggagtataggcggcgacgcgagataaccgttgaagggaaggatgtgccgaagcct
gttaagagctttaacgatgtcggttttccagaatatgttctacaagaaattgaaaaggct
ggatttactgaacctacacctattcaagctcaagggtggcctatggctctgaagggacgg
gatcttattggtattgcagaaacagggtccgggaagacacttgcttatctcttacctgct
attgttcacgttaatgcacagccattcttagctccgggagatggtccaatagttttagtt
ttagctccaactcgcgagcttgctgttcaaatacaacaagaagctactaaatttggtgca
tcttcaaagattaagaatacatgcatatacggaggggtccctaagggaccccaagttcgt
gatctccagaaaggtgttgaagttgtcattgctacacctggaaggctaattgatatgttg
gaatctcaccatacaaatttgcgaagggtgacttaccttgtgttggatgaggcagatcgg
atgttagacatgggttttgagcctcagattagaaaaattgttgatcagatccgcccagat
cgtcagactttgtactggagtgccacatggccaaaggaggtcgagcaacttgctaggagg
tccctttttaatccatataaagtaattattgggtcaccagatttgaaagccaaccatgca
attcgccagcatgttgatattgtatcagaaagtcaaaaatataacaaattagtgaaactg
ctggaggacataatggatggtagccgcattttgatttttatggacaccaaaaaagggtgt
gatcagactactagacagctccgcatggatggttggcccgcactatctattcacggagat
aaaagtcaagcagagagagattgggttctgtcagaattcagggccgggaagagtcccata
atgactgctacagatgttgcagctcgtggtctagatgtcaaggatgtgaaatacgtgatc
aattatgactttcctggatctctagaggattatgttcatcgtattggtagaactggaagg
gctggtgctaaaggtactgcatacactttcttcactgctgctaatgccagatttgcgaag
gacctcattaatatcctggaagaggctggacagaaggtcagtcctgaactggtctccatg
ggacgtggtgcacctcctccaccagcgtatggtggttctcgagatcggggaaggggatat
ggtggcggtcgcgctaggaactga
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