Salvia splendens (scarlet sage): 121794357
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Entry
121794357 CDS
T07627
Name
(RefSeq) DNA damage-binding protein 1-like
KO
K12830
splicing factor 3B subunit 3
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121794357
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspl03021
]
121794357
03041 Spliceosome [BR:
sspl03041
]
121794357
03036 Chromosome and associated proteins [BR:
sspl03036
]
121794357
Transcription machinery [BR:
sspl03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
121794357
Spliceosome [BR:
sspl03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
121794357
Complex B
121794357
Complex C
U2 SnRNP specific factors
121794357
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
121794357
TFTC complex
121794357
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
121794357
NCBI-ProteinID:
XP_042048419
LinkDB
All DBs
Position
3:complement(2879957..2887070)
Genome browser
AA seq
1369 aa
AA seq
DB search
MAVSEEQSASSSSNASTLRSPSDAFYLAKTVLRGSVVLQAVSGHFRSSSSYDVVFGKESS
IELVIIDQGGIVQSISEQPVFGTIKDLAVLPWNNKFHVQNPKILGKDILLVVSDSGKLSF
LTFCNEMHRFFPLSHVQLSDPGNSRHQVGRMLAVDSSGCYVAVSAYEDQLAIFSVSMSES
GDIIEKKIFVPPGKDGHLESAKGFTNISGTIWSMCFISRDYNQTGQEQNPLLAILLNRRG
SFYRNELMLLEWDIAEQAIHVVYQFAEAGPLAYHIVEVPQSHGFAFLFRAGDIVLMDFRN
VQSPSCVYRTSLNFTPVEETKFKNIIRIPDIMDEEGIYSVAASALLELGDINKSDDPMNI
DDYSNVLPGSNYVCSWSWEPIITNAPRILFSADSGDLYAIEVLFESDGPRVSLSDCLYKG
LPCNALLWLDGGFLAAIVDMADGMILKFEEGFLQYRGSVQNIAPILDMCIVDYPDEKHDQ
MFACSGIASEGSLRIIRSGISVEKLLKTAPIYQGVTGTWTVNLKVSDPYHSFLVLSFVEE
TRVLSVGVSFSDVTDSVGFRPDVCTLACGVVADGVLVQIYQSGVRLCLPVGAAVPPDGIP
LSSPVCTSWFPENMTISLGAVGQSIIVVATSSPSFLFILGIRALSAYHYNIYQMQCVNLQ
NELSCISIPQKHPDLNKVLMDFSVNNLVTTSPSGDHVDNIFVIGTHKPSVEVVSFTHAKG
LQVLATGTISLTNTMGTSVSGCVPQDVRLVMVDRPYVLSGLRNGMLLRFEWPSTSTPFPI
RPPAQQNFVGTSTINFQVSSNSVSSKNEVPMSMSSTSYSTEGDLPVDLQLIAVRRIGITP
VFLVSLSDSIDADMIALSDRPWLLQTARHSLSYTSISFQPSTHVTPVCSTECPSGILFVA
ENSLHLVEMVPSKRLNVQKFHLGGTPRKVLYHNESSLLLVMRTELDNDSCSSDVCCVDSL
SGSVLASFKFEPGETGKCMEFVKVGNENVLVIGTSSSAGPAIMPSGEAESTKGRLVVLCL
EHLQNSDTGSMTQRSSPIGSHAAEQLSCSSICSSPDDNSSDGVKLEETESWHLRLAYSAV
WPGLVTAVCPYLDCYFLASAGNSFYVCGFPNDNSQRVRRLAVGRTRFMIMTLTAHFTRIA
VGDCRDGVLFYSYHEDSRKLEQIYCDPVQRLVADCVLMDDDTAFVSDRKGSVVVLSSANH
LEDNVSPERNLTLSCSYYMGEIAMSMRKGSFSYKLPADDVLRDCDAVSTNNNLLRNCVMA
STLLGSIIIFIPMTREEYELLKDVQARLVIDPLTTPILGNDHNEFRSRECRGGVPKILDG
DILAQFLELTSMQQEGVLALPANLSHKPPTPVMVNQVVRLLERVHYALN
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atggcggtttcagaagaacaatctgcatcgtcgtcgtcaaatgcatctaccctccgatca
ccttccgatgcattttacttggccaaaactgtcctcagaggcagcgttgttcttcaagct
gtctccggccacttccgctcctcatcttcctacgacgtcgtcttcggaaaggaatcatca
atagaactggtgataattgatcaaggtgggattgttcaatctatttctgaacaacctgtg
ttcggcactataaaagatttagcagtccttccctggaacaacaagtttcatgtgcagaat
cctaagatactggggaaggacattttacttgtggtttctgattctggaaagctttcgttt
ctgaccttttgcaatgaaatgcacaggtttttccctttaagccatgttcaactttctgat
cctggaaattcaaggcatcaagttggaaggatgctggcggttgattccagtggttgttat
gttgctgttagtgcatatgaggatcagttggctattttttcggtctcaatgtctgaaagt
ggtgatatcattgagaagaaaatctttgttcctcctggaaaagatggacacttggaatct
gcaaagggttttactaatatttctggtactatatggagcatgtgcttcatctcgcgagat
tacaatcaaactggacaagaacagaatcctttgctggccatacttcttaataggcgcgga
tctttttatcggaatgagcttatgttgctagaatgggacattgcggaacaagctatacat
gtggtatatcaatttgcagaagctggaccattagcatatcatattgttgaagtccctcaa
tctcatgggtttgccttcctctttagggccggtgatattgtcctaatggatttcaggaat
gttcagagcccttcttgtgtctacaggacaagcttaaatttcacaccggtggaggaaacg
aaattcaaaaacattattagaataccagatattatggatgaagaaggtatttatagtgtc
gctgcctctgctttactggagctcggtgacataaataaaagtgatgatccaatgaatatc
gatgactatagtaatgtactacctggttctaattatgtttgctcatggagttgggaacct
attataactaatgctcctagaatattatttagtgctgactctggggatctctatgcaatt
gaagtcctttttgagtcggatggccccagagtaagtttatctgattgtctttataaaggt
ctaccatgcaatgctctgttatggcttgatggtggatttctggcagctattgttgatatg
gctgatgggatgatcttaaaatttgaagagggatttctacagtacagaggttcagttcaa
aacatcgcaccaatcttggacatgtgtattgttgattatcctgatgaaaaacatgatcaa
atgtttgcctgctctgggatagcatctgagggatccttaaggatcattcggagtggtatc
agtgtggagaaattactgaaaactgctccaatttatcaaggcgtaactggtacatggact
gttaatttgaaagtttcggatccttatcattcttttctagtactgtcatttgtggaagag
accagagttctttcagttggtgtcagcttttctgatgtaactgactcggtaggttttagg
cctgatgtttgtactttggcttgtggtgttgtggctgatggtgtattagttcaaatttac
caatctggagttagactgtgtttgcccgttggagcagcagtgcctcctgatggtattcct
ttgtcatctccagtatgcacatcatggttccctgaaaatatgactataagtctcggagct
gttgggcagagcataatagttgtagcgacatccagtccatccttcttattcatccttggt
attagagctttgtcggcatatcattacaatatttatcaaatgcaatgtgtaaacttgcag
aatgagttatcttgtatttcaatacctcagaagcaccctgatctgaataaagttttgatg
gatttttcagtcaataatcttgtgacaacctctccgtctggagatcatgttgataatata
tttgttattggtactcataagccttcagtagaagttgtgtcctttacacatgcgaagggg
ctacaagttcttgccacagggaccatatcactaacaaacactatggggacttctgttagt
gggtgtgttccacaagatgtgaggcttgttatggttgaccgcccgtatgttctttcggga
ttaaggaacggaatgctacttaggtttgagtggcctagtacctcaacaccctttccaatt
aggccacctgctcagcagaattttgttggtacctctacaattaacttccaggtctcatca
aactcggtctcttctaagaatgaagtaccaatgtctatgtccagtacatcctatagtact
gaaggagacttacctgttgatcttcagctgattgctgtacgccgtattggtatcacacct
gttttcttggtttcattaagtgattccattgatgctgatatgattgctctcagtgatagg
ccttggctattgcagactgcaagacacagcctatcttatacatccatatcatttcaacct
tctactcatgtcactcctgtatgttcgactgaatgccccagtggaatcttgtttgttgcg
gaaaatagtctccacttggtggaaatggtgccgagtaagaggcttaatgtgcagaaattt
catcttggcggcaccccaaggaaagttttatatcacaacgaaagcagcctgttgcttgtc
atgaggacagagttggataatgattcatgctcctcggatgtttgttgtgtggattctttg
agtggctcagttttggcatctttcaaatttgaacctggggagacagggaaatgcatggag
tttgtaaaggttgggaatgagaacgtgttggtgattggaactagctcatctgctggacca
gctattatgccaagtggtgaagctgagagtacaaaaggccgcttggtggttctttgcctt
gaacacttgcaaaattcagacactggttctatgacccagagaagttcacctattggtagt
catgctgcagaacagctttcgtgcagtagtatctgcagcagtccagatgataatagttct
gatggtgtcaaacttgaagaaactgaatcctggcacttgcgcttggcctattcagctgtc
tggccagggttggttaccgctgtctgcccttaccttgactgctacttcttggcttccgct
ggtaattctttttatgtgtgtggttttccgaatgataactctcaaagggtgagaaggctg
gcagttggaagaacacgttttatgataatgactctgactgcacatttcaccaggatagct
gttggtgattgccgagatggtgttcttttctattcataccatgaggattccagaaaattg
gagcaaatatattgtgatcctgtccagagactggttgctgattgtgtcctaatggatgat
gatactgcctttgtttcagaccggaaggggagtgttgttgtcttatcgtctgcaaatcat
ttagaagacaatgttagtccagaacggaacttgactctaagttgttcgtattatatgggt
gaaattgccatgagcatgaggaagggatcattctcatacaaacttccagcagatgatgtg
ctaagggactgtgatgctgttagtactaacaataatttattaagaaactgtgtcatggca
tcgacactgttgggaagcataataatcttcattcctatgacaagggaggaatacgagcta
ttaaaagacgttcaggctaggttggtcattgaccctcttactactccaattttgggaaat
gatcacaatgagttccgcagccgcgaatgtcggggtggggtacctaagatactggatggg
gacattctggctcaattcttagagcttacaagtatgcaacaagagggtgttttggcatta
cctgcaaacctaagccataaacctcccactccagtaatggttaatcaggttgttcgcctg
cttgagcgagttcattatgccttaaactaa
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integrated database retrieval system
