KEGG   Salvia splendens (scarlet sage): 121794438
Entry
121794438         CDS       T07627                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2-like isoform X1
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
sspl  Salvia splendens (scarlet sage)
Pathway
sspl03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sspl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    121794438
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sspl03021]
    121794438
Enzymes [BR:sspl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     121794438
Transcription machinery [BR:sspl03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     121794438
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 121794438
NCBI-ProteinID: XP_042048531
LinkDB
Position
3:3910397..3917655
AA seq 1214 aa
MDGWDFINEVGPSGVKDKFSNGSTQMEFDDDVDFNYSDSEDEVDCALQELDKGFLKGFCK
KASTAFFEKYGLISHQINSYNDFVKHGIQQVFESIGEIRIEPGYDPTKRGDGEWRRATLR
FGKVTLDRPTFWTGEKFSSVDGAKEFLELLPRHAHLQNMTYSSRIKVETYLQVYTESPSR
SDKFKTGVDIVVEKTILSETQTDVNFGRLPVMVKSDLCWMSSPEPDGKEKRDCEFDQGGY
FVIKGAEKTFIAQEQICLKRLWVAKDPTWTVAYRPVAKRNRVYIKLVPKVEHLTAGDKIL
TAYFYVTEIPIWLLFFALGVPNDREVVKLIGLDTDEDSTISNILVPSIYDADKKFDGFRK
AGNAIEHIKKLMQGCNFPPTETVDDLIDTYLFPNLRSRMQKASFLAYMVKCLLEAYRGLR
KVDNRDDFRNKRVELAGELLERELRVHIKHAERRMVKAIQRDLYKDREVQTIDHYLDASI
ITNGLSRAFSTGAWVHPYKRMERMSGVVANLRRTNPLQAVCDMRRTRQQVSYTGRVGDAR
YPHPSHWGKVCFLSTPDGENCGLVKNLASLGLVSTKILELESILKRFHECGMENLVDDGS
CLLDGKHKVFLDGDWVGVCKDSSSFVAKLRRKRRKMEIPDQIEIKRDKHQGEVRIFADAG
RILRPLFVVQNLKKIKDLKGEFLFQSLLNNGIVELIGPEEEEDCQTAWGIDYLFTAELDN
PPVKYTHCEFDSSFLLGLSCGIIPFANHDHARRVLYQSAKHSQQAIGYSTTNPSIRVDTN
SHQLYYPQRSLFRTMLSDCLGKSRYAEHHKGMMPRPDFFNGQCAIVAVNVHLGYNQEDSL
VMNRASLERGMFRTEHVRSYKAEVENSQAVGKRPKTDEFVSFGKMQSKIGRVDSLDDDGF
PFIGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSANDEGKNFAVVSLRQVRA
PCLGDKFSSMHGQKGVLGFLESQENFPFTIKGIVPDIVINPHAFPSRQTPGQLLEAALGK
GIALGGGLKYATPFSTPSVEDITTQLHRLGYSRWGGERVYDGRTGEKVESLIFMGPTFYQ
RLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFT
LSDSSQMHICRKCKNMAGVIQRSVFGGQKVRGPYCRFCESVEDVVRVNVPYGAKLLCQEL
FSMGISLKFETELY
NT seq 3645 nt   +upstreamnt  +downstreamnt
atggatgggtgggattttataaatgaagtaggacctagcggcgtcaaggataaattttct
aacgggtcgacacaaatggaatttgatgatgatgtagacttcaactattctgattctgaa
gatgaggtggattgtgccctgcaagaactggacaaaggcttcttgaaaggattctgtaag
aaggcttcaacggcattcttcgagaaatatggtttaataagccaccagatcaattcttac
aatgactttgttaagcatgggatccaacaagtctttgaatccattggggagattaggatt
gaacctggatatgatcctacaaaaagaggggatggtgagtggagacgtgcaactcttagg
tttggaaaagtcacacttgatcgcccaacattctggaccggtgaaaagttttcttcagtt
gatggtgctaaagagtttttggagcttttgcccaggcatgcacatcttcaaaatatgacc
tattcatccaggattaaagttgagacttatcttcaggtgtacacagaaagcccctcgaga
agtgacaaattcaaaactggtgtagatatagttgttgagaagacaatactgagtgagact
caaactgatgttaactttgggaggctccctgtcatggtgaaatcggacttgtgctggatg
agttcacctgaacctgatggtaaagaaaaaagagattgtgaatttgatcaagggggttat
tttgttatcaagggtgctgagaagacattcattgctcaggagcaaatatgccttaagagg
ctgtgggtggctaaggatcctacatggacagttgcatatcgtccagtggcaaaaaggaat
cgagtgtatataaagttggttccaaaagtggagcatttgactgctggagacaagatcctc
actgcctacttttatgtcacggagattcctatttggcttttgttctttgctctgggtgtt
ccaaatgatagagaggtggttaagctgattggtctggacactgatgaagactctacaatt
tcaaatatactcgtgccatcgatatatgatgctgataagaaatttgatggtttccgtaag
gcaggcaatgctattgagcacatcaagaaactgatgcagggctgcaattttccacctaca
gaaacagtggatgatttgattgatacctacctctttcccaatctgaggagccggatgcag
aaggcttcttttcttgcctatatggtgaagtgcctgctggaggcatacagagggctccgc
aaagttgacaatagagacgactttaggaacaagagggtggagttggcaggtgaactcctt
gaaagagaactgagggtccacattaaacatgcggagaggcgaatggtgaaagccatacag
agagacctgtacaaagatagggaggtgcagaccattgatcactacttggatgcctcaata
atcaccaatggtctttccagagccttctcaaccggagcttgggtgcacccttacaagagg
atggaaagaatgtctggtgtagttgctaatctgaggcgaacaaatcccttgcaggcagtc
tgtgatatgcgaagaactcgacagcaggtctcatacacaggcagagtcggtgatgctaga
tacccgcacccatctcattggggtaaggtctgctttctctctacaccagatggagaaaat
tgtggtctggttaagaatctggccagcctgggtcttgtcagtactaaaatcctggaacta
gaaagcattctaaagaggtttcatgagtgtggaatggaaaatttggttgatgatggttct
tgtttgcttgatggaaagcacaaagtttttctggatggagattgggttggagtatgcaaa
gattcttcatcatttgttgctaagctgagacgcaagagacgcaaaatggaaatacctgat
cagattgagatcaaaagagacaagcatcagggtgaagtgcgtatatttgctgatgctgga
aggatactgcgacctctctttgttgtccagaacttgaaaaaaatcaaagatttgaaagga
gagtttttgtttcaatctcttcttaataatggcatagttgagttgattggaccggaagag
gaagaagactgtcaaactgcatggggaattgactatctattcactgccgaactagataac
ccacctgtgaaatatacccactgtgagtttgatagttctttccttctaggtttaagctgt
ggcataattccgtttgccaaccatgatcatgctaggagagttctttaccaatctgctaag
cactctcagcaagccattgggtactcgaccacaaatcctagcattcgagttgatacaaac
tcccatcagctgtactatccccagaggtctcttttcagaaccatgctttcagattgcctt
gggaagtctaggtatgctgagcatcacaaagggatgatgccacgacctgacttcttcaac
ggccagtgtgctattgtggctgttaatgttcatcttgggtataatcaagaagactcactt
gtgatgaaccgtgcttctttagagcgtggcatgttcagaactgaacatgttaggagttac
aaggctgaggttgaaaattcacaagctgtggggaaaagacccaagactgatgagtttgtt
agttttgggaagatgcaaagcaagattgggcgtgttgacagccttgatgatgatggcttt
ccctttattggtgcaaatctccaaactggtgacatagtcattggaaagcatgctgcttca
ggggttgatcatagtatcaagctcaagcatactgaaaggggcatggttcaaaaggttgtg
ctgtcagccaatgatgagggaaagaactttgcagttgtgtctttgagacaggttcgtgct
ccatgcttgggggacaaattttcgagcatgcacgggcagaaaggtgttctggggtttctg
gagtctcaggagaactttccttttaccataaaaggaatagttccagatattgtgataaac
ccacatgcgtttccttctcgacaaacacccggacagcttctggaagctgcccttggcaaa
gggattgcacttggaggtggactgaaatacgcaaccccattttccactccttcggttgaa
gatataaccacccaacttcacaggctcggatattccagatggggaggggaaagagtatat
gatgggcgtacaggtgaaaaggttgaatctctcatctttatggggccaacattctaccag
cgtcttactcatatggctgaggacaaggtgaagttcagaaatacagggccggttcaccct
cttactcgtcagcccgttgctgacaggaaacgctttggtggaatcaaatttggtgagatg
gaacgagactgccttatagcccatggtgcagcagccaacctgcatgagcgtctattcacc
ctcagtgattcatcacagatgcacatatgcaggaagtgcaagaacatggctggtgtgatc
cagcgatcagtgtttggtggtcagaaggttcgtggcccatactgtcgattctgcgagtct
gtggaagatgtggtgagggtgaatgtgccttatggggctaaattgctttgccaagaactc
ttcagcatggggatttcactcaagtttgagactgagttatactga

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