Salvia splendens (scarlet sage): 121794711
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Entry
121794711 CDS
T07627
Name
(RefSeq) pre-mRNA-processing factor 17-like
KO
K12816
pre-mRNA-processing factor 17
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121794711
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121794711
Spliceosome [BR:
sspl03041
]
Complex C
Other components
Step II factors
121794711
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_EML
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_DCAF4
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_NWD2_C
Beta-prop_Vps41
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
121794711
NCBI-ProteinID:
XP_042048932
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Position
3:complement(8320948..8325320)
Genome browser
AA seq
584 aa
AA seq
DB search
MDLLQSYKDTHMEDDTLSPASEPDPSPDSSPVRAIPAKSAAPKVDDTMLSLTVAGKAQFQ
AQKPIDPTQHLVSFNPTYDQLWAPIVGPSHPYAKDGLAQGLRNHKLGFVENANIEPFVFD
EQYNTFYKFGYAADPSENNYVGDVEGFKTNDGISVYNIPQHEQKKRKLEKKKEMLKENEE
SGEVDSTELENPSTDTWLMRNRKSPWAGKRDWVQGELTEEQKKYAEEHAKKKGEKEGGER
EKGEAHVDKSTFHGNEDKDYQGRSWIAPPKDAKASNNHCYIPKRLVHTWSGHTKGVSAIR
FFPNHGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHGKAVRDIWFNNDGSKFLSAGYDKN
IKYWDTETGQVISTFSTGKIPYVVRLNPDEDKQNVLLAGMSDKKIVQWDINSGQITQEYD
QHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNSNW
LACQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGRCWFW
DWKSCKVFRTLKCHDGVCIGAAWHPLEQSKVATCGWDGLIKYWD
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atggatctactgcaatcatacaaagatacccacatggaagatgacactttatcgccggca
tctgaacccgacccatctcccgattcgtccccggtgcgggctattccggccaaatccgcc
gcccctaaagtcgacgatacaatgctctcacttaccgtagccgggaaggcccagtttcag
gcgcagaagccaatagacccgacccagcacctcgtctccttcaaccccacctacgaccag
ctgtgggctccaatcgtcggcccctctcatccgtacgccaaggatggcctagcgcagggc
ctccgcaatcacaagctagggtttgtggagaatgcgaatatcgagccgtttgtgtttgac
gagcagtacaatactttctacaagttcgggtacgcggcagatccatcggagaacaattac
gttggtgatgtggaagggtttaagaccaacgacgggatttcggtgtataatattccgcag
cacgagcagaagaagaggaaattggagaagaagaaggagatgctgaaagagaatgaggaa
agcggtgaggtggattcgacggagctggagaatccttctacggatacctggttgatgagg
aacaggaagagtccatgggcggggaaaagggattgggtgcagggagagctgaccgaggag
cagaagaaatatgctgaagagcacgccaagaagaagggagagaaggagggaggtgagagg
gagaaaggagaagcacatgttgacaagtctacgttccatgggaacgaggacaaagattat
caaggacggtcgtggattgcgcctcctaaggatgccaaagcaagtaacaatcattgttat
atacccaagagattagtgcatacttggagtggacataccaagggggtttcagctattagg
ttcttccccaatcatggtcacttgatattgtctgctgggatggacacaaaggtcaaaatt
tgggacgttttcaattccgggaaatgtatgagaacctacatggggcatggtaaggctgtg
cgagatatatggtttaataatgatgggtccaagtttttgagtgctggttatgataagaat
atcaagtattgggatactgagacggggcaagtgatatcgaccttttcaactggcaaaatt
ccgtatgtagtgaggcttaacccggatgaggataagcagaatgttttgcttgcaggaatg
agtgataagaagattgttcagtgggatataaacagcgggcagatcacacaggagtatgat
cagcatctaggggcagtgaatacaattacttttgtggataacaataggaggtttgttact
tcaagtgatgacaagtcactgcgtgtatgggagtttgggatccctgtggtgatcaagtat
attagcgaaccccatatgcactcaatgccctcgatttctttgcatccgaattccaattgg
ctggcctgccagagcttggataatcagatacttatatacagtacaagggagagattccag
ctcaataagaagaagagatttgctgggcatattgtggctgggtatgcttgtcaggttaac
ttttcacctgatggacggtttgtcatgtctggagacggtgagggtagatgctggttttgg
gattggaagagttgcaaagtatttagaactctcaagtgccacgatggagtttgtattggt
gctgcatggcatccgctggaacaaagtaaagttgctacctgtggctgggatggattgatc
aaatactgggattaa
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