Salvia splendens (scarlet sage): 121794757
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Entry
121794757 CDS
T07627
Name
(RefSeq) DNA polymerase lambda-like isoform X1
KO
K03512
DNA polymerase lambda [EC:
2.7.7.7
4.2.99.-]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03410
Base excision repair
sspl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
121794757
03450 Non-homologous end-joining
121794757
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sspl03400
]
121794757
Enzymes [BR:
sspl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
121794757
DNA repair and recombination proteins [BR:
sspl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
121794757
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
121794757
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
DNA_pol_lambd_f
DNA_pol_B_thumb
HHH_8
BRCT
NTP_transf_2
RTT107_BRCT_5
BRCT_2
IMS_HHH_1
HHH_5
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
121794757
NCBI-ProteinID:
XP_042049018
LinkDB
All DBs
Position
3:complement(8996979..9001253)
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AA seq
543 aa
AA seq
DB search
MAPKAKKKSSPPSDPNGIFSGITVFLIETGVQARRLQIWKQKLEQLGAKIEDIFSKRVTH
IFAADSVSLLKKVGAQNLKRFKGKILNYQWIEDCLKSGEKVPEDSYVFSEDTAENYASKA
SDKNLKHTDANLSNEDQLPSKKIKTCSNSKTVESEERPRLSVDSAIYSSKCDNASGLSQS
SGPRSPQVTSPSLDSVNRDVSSCDASSLYSPPDMNRNITEIFGKLIDIYRALGEDRRSFS
YYKAIPVIEKLPFKIESADQVKHLPGIGKSLQDHIQEIVNTGRLSKLEHFEKDEKVRSIS
LFGEVWGIGPTTASKLYDKGHRTLDDLENEESLTNAQRLGLKYFDDIKTRIPRHEVQEME
SLLKKIGEEILPGADIVCGGSYRRGKASCGDMDVVITHPDGKSHIGFLTKYVKRLKDINF
LREDLVFSIHSEEGTDSGVDTYFGLCTYPGRELRHRIDLKVYPRDIYAFGLIAWTGNDVL
NRRLRILAESKGFRLDDTGLFPATQSSGEKRGSKGSASLKFATEKQVFDFLGFPWVEPNQ
RNL
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atggcgccaaaggctaagaagaaatcatctccgccgtctgatcctaacggaatattttct
ggaatcaccgtcttccttattgaaaccggagttcaagcgcgtcgccttcagatttggaag
caaaagctggagcagttgggggctaagattgaggacattttctccaaaagggttacacac
atttttgccgcggattcggtttcgcttctcaaaaaagttggtgcccagaatctgaagcga
ttcaaaggaaaaattttgaactatcagtggatagaggactgcttgaaatcaggagaaaag
gtgcctgaagattcatatgttttctctgaggacactgcggagaattatgctagcaaggct
agtgacaagaatctgaagcataccgatgcaaatttaagtaatgaagaccaattgccatca
aagaagatcaagacctgttccaattccaaaacagttgaatctgaagaaaggcctaggctt
tcagtggattccgctatatattcttcaaaatgtgataatgctagcggactgtctcaatcg
tcaggccctagaagccctcaagtcaccagtccgagtttggatagtgtaaatagagacgtt
tcctcatgcgatgcatcatcattgtatagtcctcctgatatgaacaggaatataactgag
atatttggaaagcttatcgacatttacagagccctaggtgaagatcgtaggtcatttagt
tattacaaggctattccagttattgaaaaattgcctttcaaaattgaaagtgcagaccag
gtcaaacatttacctggtattggaaagtctctccaggatcatattcaggaaatagtgaac
actggaaggctatccaagttggagcacttcgagaaggatgagaaggtacgctcaatcagt
ttatttggagaagtatggggcattggacctacaactgcatcaaaactttatgataaagga
cacagaaccctggatgatcttgaaaatgaggaatcattaacaaatgcccaaaggttaggc
ttaaaatactttgatgacatcaagaccagaattccgcgccacgaggttcaggagatggag
agtcttctaaagaaaattggagaagagatattgcctggggcagacattgtttgtggagga
tcatacagacgtgggaaggcttcttgtggggatatggatgttgtgatcacacaccctgat
gggaaaagtcatataggttttcttacaaaatatgtaaagcgtctcaaggatattaacttc
ttaagagaggatttggtcttcagtattcacagtgaggagggtacagattctggagtggat
acatattttggtctttgcacctatcctggtcgagagttgcgacatcgcatagatttgaag
gtttacccgagggatatatatgcatttggattaatagcatggacagggaacgatgtgctg
aacaggaggctgagaatattagcagaatcaaagggattcaggcttgatgacacagggttg
ttccctgcaactcaaagttcaggggaaaaaaggggaagcaaaggcagcgcaagtttgaag
tttgcaactgaaaaacaagtgtttgatttccttgggttcccatgggtggagcccaatcaa
aggaatttgtga
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