Salvia splendens (scarlet sage): 121794991
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Entry
121794991 CDS
T07627
Name
(RefSeq) lys-63-specific deubiquitinase BRCC36-like
KO
K11864
BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121794991
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
sspl01002
]
121794991
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sspl04121
]
121794991
03036 Chromosome and associated proteins [BR:
sspl03036
]
121794991
03400 DNA repair and recombination proteins [BR:
sspl03400
]
121794991
Peptidases and inhibitors [BR:
sspl01002
]
Metallo peptidases
Family M67
121794991
Ubiquitin system [BR:
sspl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
121794991
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
121794991
BRISC complex
121794991
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
BRISC complex
121794991
DNA repair and recombination proteins [BR:
sspl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
121794991
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCC36_C
JAB
Prok-JAB
UPF0172
Motif
Other DBs
NCBI-GeneID:
121794991
NCBI-ProteinID:
XP_042049349
LinkDB
All DBs
Position
3:12324456..12329895
Genome browser
AA seq
428 aa
AA seq
DB search
MSLTSVKMSEDVWLTCLTHALSTETEEIMGLLLGDIQSSKNGNVTALIWGALPQPRSDRQ
KDRVETNPEQLTAASVHAERMTMETGTTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLD
SGFIGLIFSCFSEDAQKVGRIQVIAFQSMDGKQGHMMKPLSLTPAQKSSVIDLDSSMSSS
DNAIALFGSSKGETMEQDTGDSEAASRASTGSGKSPRLGGFFANANAKTGNNSHANSLND
AIHDFDPMDMSEGMQEAMHLSNLEMSGAEYIRKEIPLHVLPTSSLLSLDSPLSSFTNLQR
VLYEEEKTAYNQAMAQNTRDGKIHPLSFIHHTSTYKSSMCKMIEYCLSPAMTVLQDRLRE
NEIQLNLLTEEANQLESEVARGSPSNSSPRSPSQGHRSSSSGHRDLYPTDFSHLKNVSGS
RSRRGSQS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgtctctaacgagtgtgaagatgtcggaggatgtgtggttgacgtgcctcacccatgca
ttgtccactgagactgaggagatcatgggccttcttcttggtgatattcagagttctaag
aatggtaatgttactgcattgatttggggagcacttccacaaccacgttctgatcgacag
aaggatagagtagagactaacccagagcagctgactgctgcatcagttcatgctgagaga
atgacaatggaaacaggaactacgactagagtgattggctggtatcattcacaccctcat
atcacagtcctaccatctcatgttgatgtgcgaactcaagctatgtatcagctattggat
tctgggtttattggtttgatattttcctgtttcagtgaagatgctcaaaaggtcggaagg
attcaagtcattgcatttcagtctatggatgggaagcagggtcacatgatgaaacctctt
tctctcactcctgctcaaaaaagttctgttatagatttagattcttcgatgagttcttca
gacaatgcaattgccttgtttggttcttccaaaggagaaaccatggaacaagacactgga
gattcggaggcagccagtagggcttctacgggctcggggaaatcaccacgtttgggaggt
ttttttgctaatgctaatgctaaaacaggaaacaatagtcatgctaacagtttgaatgat
gcaattcatgattttgatcccatggatatgtctgagggtatgcaagaagcgatgcatttg
tcaaatttggagatgagtggcgcagaatatatcagaaaggaaattcctcttcatgttctc
cctacatcatcccttctgagtctcgattctcctttgtcatcatttacaaatctccagcgg
gtgctgtatgaagaggagaagactgcgtacaatcaagcaatggcacaaaacacgagggat
ggaaaaattcaccccctctctttcattcatcacacctccacgtacaagtcttccatgtgt
aaaatgatcgaatactgcttgagtcccgccatgactgttcttcaagatcgcttgagagaa
aatgaaattcagttaaatctgcttacggaagaagccaaccaactggaatcagaggttgca
agagggagtccctcaaattcatccccccgctctccatctcaagggcacaggagtagttcc
tctggtcacagggacctgtatccgacggactttagccacctaaaaaatgtcagtggtagc
cggagccgaagagggtcccagtcatga
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