Salvia splendens (scarlet sage): 121795340
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Entry
121795340 CDS
T07627
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121795340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121795340
Spliceosome [BR:
sspl03041
]
Complex B
Other components
Prp19-related factors
121795340
Complex C
121795340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH
zf-CCCH_4
zf-CCCH_10
zf-CCCH_12
zf-CCCH_3
RRM_3
RRM_YTH1
RRM_occluded
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
121795340
NCBI-ProteinID:
XP_042049799
LinkDB
All DBs
Position
3:18460477..18463766
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AA seq
470 aa
AA seq
DB search
MAHRLLRDADADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR
DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREYFAE
EHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHVCSFFIRGQCTRGPECPYR
HEMPVEGELSQQNIKDRYYGVNDPVAMKLLSKAGEMPSLEPPEDESIRTLYVGGLDARIT
EQDLRDNFYAHGEIESVKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRMKLLWGR
PQAPKLESEGSDEANQQAAVTHSGLLPRAVISQQQNQPLQAPSPGAQTQPPPMPYFNIPP
LPQHERAYYPSMDPQRMGALIRSQEGLSSGPSGSNENRSGSEQQHQQAQQYGYPSMAPPR
GQFYPSYYQQYGHMGPPPRVPPSNQHYPQQYQGNVPAAPPPSATGTSQQP
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggcacacagactgctgagggacgccgacgctgacgggtgggagcgctctgatttccca
attatatgtgaatcgtgccttggcgacaatccatacgtccgaatgacaaaagctgattac
gataaggagtgtaagatctgcactcggccatttacggtgttcaggtggaggccaggccgt
gatgcaagatacaagaaatctgagatatgccaaacttgtagtaagctgaaaaatgtttgt
caggtttgccttttggatcttgagtatggattgcccgttcaggtccgcgatactgctctg
agtattgattctaacgatgctattccaaagagtgatgtgaatagagagtactttgcagag
gaacatgatcgcaaggcaagagctgggatagattatgagtcttcatttggaaaggctcgc
ccaaatgatactattttgaaactccagagaactacaccatattacaagagaaaccgagct
catgtttgcagtttcttcattcgtggtcaatgtacaagaggcccagagtgcccttacagg
cacgagatgcctgttgaaggtgaattgtctcaacaaaacattaaagatcgttactacgga
gtaaatgatccagtggctatgaagctattgagcaaggctggagaaatgccttctctggag
cctcctgaggacgagagcattagaacgctgtatgtgggagggcttgatgctaggattact
gagcaggatctaagagacaacttctatgcgcatggagaaattgagtctgtcaagatggtt
ctccagagggcttgtgcatttgtgacttacacaacacgagaaggtgctgagaaagcagct
gaggaactttccaacaaactagttattaaaggcttgaggatgaagttgctgtggggcaga
ccccaagctccaaagctggaatctgaaggctctgatgaagcaaatcagcaagcagcagtg
actcacagtgggttgctcccaagggcagtcatatcacagcaacagaaccagcctcttcaa
gctccctcgcctggcgctcaaacacaaccgccgcctatgccatatttcaacattcctcct
ctgcctcagcatgagagggcatattatccttctatggatccccagaggatgggcgctctc
attcggtctcaagaggggctttccagcgggccctctggatctaatgaaaatagaagtggt
tctgaacagcagcatcaacaagctcagcagtatggctacccaagcatggcgccccctcgg
ggtcagttttacccatcatactaccagcagtatggccacatgggaccgcctcctcgagtg
ccgccgtctaatcaacactaccctcaacagtatcaaggtaatgtgcctgcagctccaccc
ccttcagctactgggacatcacagcagccatga
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