Salvia splendens (scarlet sage): 121795614
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Entry
121795614 CDS
T07627
Name
(RefSeq) uncharacterized protein LOC121795614 isoform X1
KO
K06100
symplekin
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121795614
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspl03021
]
121795614
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121795614
Transcription machinery [BR:
sspl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121795614
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
121795614
U7-dependent histone pre-mRNA processing factors
121795614
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_EZ
HEAT_2
HEAT_GCN1_C
Adaptin_N
Motif
Other DBs
NCBI-GeneID:
121795614
NCBI-ProteinID:
XP_042050086
LinkDB
All DBs
Position
3:29379796..29388870
Genome browser
AA seq
1333 aa
AA seq
DB search
MVAMAPAVSREKIAARINSIKYGAPADLSPKLDHLRRLREELMAADSLLVVELVSPLLDL
LSDRLSPVRKFTTRMIGEIGLKHLQLLPEIIPALVNVLKDDTPAVARQAISCGFDIFRYS
LVNVAIQGLYSSEFDDSLRSSWAWVSKFRDEICSMAFKEESEGRKLPALKFVESIVLLYT
PDPNGSLEPPSDKNFQGNFEEFNVSWLRGGHPLLNVRDLSAEASQSLGLLLDQLRSPSLK
SHSYLVIIVLIKSLSAVARKRPAFYGRILPVLLGLDPSSSVTSVSKGMHLAGVHHALKNA
FESCLNCTHPGAAPWRDRLVNALKEIKVGKSVAQAANDMPENNGRTEWTRDSDISQILED
EKPSIKSLMEHGNTGRKRTGGLVTVDATEDDNSGKRARSTPGDLDGPGNERNQGQDRVPS
SGTTPFSDVDSGPVQQLVAMFAALVAQGEKAAASLEILISSISADLLAEVVMANIWNFPP
ERLKSEGDEEPLTSAAAHTEMVGSDTHIKHLSFLLKDTLLQSTSSQETETGNGDSELEQN
LEEEPPVTLAGGNVAHDDLSNTREHTAVPASESVCSGDISYPMETGYAVITSEVTDIEGR
ENEIPGLSSATEGDGLTENMDTIPKGSVHSDDANQEKSSNLGGISIETDRTPTELAQSLS
TDRSEELSPKAATTDVSSLNSSTATSVGLASQLVLPKIGAPVIHLADEQKDQLQQLAFVR
IVDAYKHVAVAGGSQVRLSVLAHTGLEFPSELDPWKSLQAHVLSDYVNHEGHELTSRVLY
RLFGEAEEDRDFFISATAKSVYEAFLLQVAETLRDSFPASDKSLSRLLGEAPYLPKSVFE
MLECLCSPSAGAISEKELPGGDRVTQGLSAIWSLILLRPPIRDACLQIALKSAVHQLEEV
RMKAIRLVANKLYPLSTISGRIEDFAKDMLLSVVTDDGISTKEANELQKDENPSSENQPG
SSATKEIPPDGHHMTASESSSSFTVVEVQRCMALYFALCTKKHSLFRQIFYAYKDTSKVA
KQVVHQQIPLLVRTIGPSSDLLDILSDPPIGSEGLAIQVVNTLTDGTVPSPNLVSTIKRL
YDTKLKDIDILVPVLPFLSKDEVSVLFPHLVNVPLDKFQVVLPRLLQGFNHSTPVLTPAE
ALIAIHKIDPEKDGVPLRKITDACNACFEQRHTFSQQVLAKVLNQLVEQIPLPFLFMRTV
LQAIGAFPSLVQFIMEILSRLVSKQIWKNPRQWVGFVKCAHVTMPDSFGVLLQLPAAQLE
NSLNRIPALKAPLVEHASQPNIRSTLPRSTLTVLGLEQELPTSTTQPNQSQTQTEEADNS
EKTAATEKSKESM
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atggttgctatggcgcctgcggtatcgcgggagaaaattgctgctagaataaattcgatt
aagtacggagcccccgccgatctgtccccgaaactcgaccacctccggcgactgcgggag
gaactcatggcggcggattcccttctggttgttgaactcgtttcccctcttctcgacctt
ctctcagaccgtttgagccccgtccgcaaattcaccactcggatgattggtgaaattggt
ttaaagcacttgcaattgttacctgaaattataccagcactcgtaaatgttctgaaagat
gatacacctgctgttgctcgacaggctatctcatgtggttttgatatattccgctattct
ctggtcaacgtcgccatccaggggttgtactcaagtgagtttgatgattcactgcgttca
tcatgggcatgggttagcaagtttagagatgaaatatgctcaatggcatttaaggaggaa
agtgaagggagaaagttgcctgcattgaagtttgtggaatctattgtgttactttacacc
cctgatcctaatggctctttggagccaccttctgataaaaattttcaaggaaattttgaa
gaattcaatgtctcatggctacgtggtggacatccccttctcaatgttagagatttgtca
gctgaggcaagccaaagtttaggtcttttgcttgatcagctgaggtccccatctttgaaa
tcccatagttatttggtgataatagttctaattaagagtctttcagctgttgcaagaaag
aggcctgccttttatggccgcattctgcctgttttacttggtttggatccttcaagttct
gtaacttctgttagtaaaggcatgcatcttgctggggtgcatcatgcgctgaagaatgca
tttgaatcttgtttgaattgtactcaccctggtgctgcaccgtggagggatcgtttagtt
aatgcactaaaagaaattaaagttggaaagtcagttgcacaagctgccaatgatatgcca
gagaacaatggaagaactgagtggacaagggattctgatatatctcaaattcttgaggat
gaaaaaccttctattaaatctctgatggagcatggtaatactggtcgaaagagaactgga
gggctagttacggtagatgctactgaagatgacaactccggaaagcgtgcaagatcaaca
cctggcgatttagatggaccaggcaatgaaaggaatcagggacaagatagagtgccatct
agtggaacaacaccattttcagatgtagatagtgggccagtgcagcagcttgtggcaatg
tttgctgcattggttgctcagggtgagaaagcggctgcttctttggagattctcatctct
agcatttcagccgatttattagccgaagtagttatggccaacatctggaattttcctcca
gaaagacttaaatctgaaggggatgaagagccgctcacaagtgcggctgctcatactgag
atggttggaagtgatactcacatcaaacatttgtcgtttttgctaaaagatacactgtta
caatctacgtcctctcaagagacagaaactggaaatggagatagtgagcttgagcaaaat
ctagaagaggaaccaccagtaaccttggctggcggtaatgttgcacatgatgacttgagc
aatacaagggaacatactgcagtccctgccagtgagtctgtttgttctggggacatatca
tatccaatggagactggttatgcagtgatcacatctgaagtcactgatattgaaggtagg
gaaaatgaaattccaggactatcttcagctactgagggtgatggattaactgaaaacatg
gatactattccaaagggctcggttcattcagatgatgctaatcaagagaaatcttctaat
ttgggtgggatatcaatagaaacagatagaacaccaactgaactagctcaatctttatcc
acggataggtctgaagagcttagccctaaagcagcaaccacagatgtgagtagcttaaat
tcctcaactgcaacttctgttgggttagcttctcagttggttctcccgaagataggagcc
cctgtcatccacctagctgacgagcaaaaggatcaacttcaacaacttgcttttgtgcgt
attgttgatgcttataaacatgttgctgttgctggtggctctcaagtccgtctttctgtc
ctcgcacatacaggattggagttcccttcagagctagacccatggaagtcactgcaggct
catgtattatcagactacgtaaatcatgaggggcacgagttaacatcgcgcgtcctctac
aggttatttggtgaggcagaagaagatcgtgacttctttatttcagccactgctaaatct
gtctatgaagcatttcttctccaagtggcagaaacacttagagattcttttccagcttct
gacaaatctctgagtagattgcttggggaggccccgtatcttccaaagtcagtttttgaa
atgttggagtgcttatgctctcctagtgctggtgctatctcagagaaggagttgcctggt
ggagatagagttacccaggggctcagtgctatctggagcttgattttgctcagacctcca
attcgcgatgcttgcctccaaattgctttgaagagtgcagtgcatcaattagaagaagtt
cgaatgaaggcaatacggctggttgcaaacaagctttatcctttgtcaacaatatctgga
agaattgaagattttgcgaaggatatgttgctgtcagttgtaacagatgatggaatctct
acgaaggaggctaatgagctgcagaaggatgaaaatccttcaagtgaaaaccagccaggt
agttcagcaactaaagagattcccccagatggtcatcatatgacagcatctgaaagcagt
tcatcttttactgtggttgaggttcagcgttgcatggctctttatttcgcactgtgtaca
aagaaacattctctctttcgacaaattttttatgcgtataaagacacatccaaagtagca
aagcaggtagttcatcaacaaattccattacttgttcgaactattggcccatctagtgat
ctccttgatatattatctgatccaccaataggaagtgaaggcctagcaattcaggtagtg
aatacactgacagatggaacagttccttctccaaacttggtatctaccattaagaggctg
tatgatacaaagctgaaggatattgatattctggttcctgtattacctttcttatcaaaa
gatgaggtttcagtactttttccccatcttgtgaatgtaccgctggataagttccaagtt
gtgcttcctcgtcttcttcaggggttcaatcattctactccggtcttaacccctgctgaa
gcattaattgccatccataagattgacccagaaaaagatggggttcctttgagaaagatc
acagatgcttgcaatgcttgtttcgaacagagacatacattttcccagcaagttctggcc
aaagtgttgaatcaattggtcgagcaaattcctttaccctttctattcatgcgtacagta
ttgcaagcaattggcgcttttccttctttggtccaattcataatggagattctatcccgt
cttgtaagcaagcagatttggaagaatccaaggcagtgggtgggtttcgtgaagtgtgcg
catgtgaccatgccagattcatttggtgttctgcttcagctaccggcagcacagcttgaa
aattcattgaatagaataccagctctcaaggctcctttagttgaacatgcaagccaaccg
aacataagatccacgcttccgagatctacattaactgttcttggcttggagcaagagcta
ccaacctctacaacacaaccaaaccaatctcaaactcagactgaagaggctgataattcg
gaaaagacagcagcgacagaaaagtccaaggaatctatgtaa
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