Salvia splendens (scarlet sage): 121796180
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Entry
121796180 CDS
T07627
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-like
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121796180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121796180
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121796180
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TPR_14
Succ_CoA_lig
DUF7674
Motif
Other DBs
NCBI-GeneID:
121796180
NCBI-ProteinID:
XP_042050875
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Position
3:complement(42767680..42774466)
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AA seq
847 aa
AA seq
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MDSPSASVALNTRDGSPSAAVGEDDGALFAEGLAKEAAVLFQSGKFADCLKILNQILQQK
ENDPKVCHNVAIVESLQDGCSDPRRLIKALEKIKEQSEELACASGEQEVSSNNGSEHTSS
IRGNNTPRHPISSIVYNDELDTSVATFNIAVIWYHLHEYARSFSYLDTLYQTIEPIDEGT
ALRICLLLLDVALLSHNASRSSDVISYIERIFFASSPGNQADNGSSAHQQPLLVSKSTSL
PNNLTLHDGSHHDSTPNDSLTRTLSEEALEDEPLPVLSSLDISGQNLQRPGIVSANDLQR
IQPEGSISTADLRLKLHLYKVRFLLLTRNLKAAKREVKMAMNLARGKDYPLALYLKSQLE
YARGNHRKAIKLLMASSNSIEMGISSMYYNDLGCIYYRLGKQHTSGVLFSKALSNSSAVR
KEKSPNLLTLSQDKSLLITYNCGIQSLACGRPFHAARCFQMASLIFYNRPLLWLRIAECC
LMALDKGLIKSSSASAISEVGVNVIGKGKWRQLALRYGPSNGHGIYVGINSSVKGDGRQP
DLSMALAWQSLVNALYLLDSSEVFKADKAPVSEEKGLGEAPLSQSSNLKNATGGDSKAAT
VASGSCQANANGEAKEHKGGQNLAGTLANSVLDYEHIRMKENLMIRQAVLADLAFVELAL
GDPLKALSTARSLLELPDCSKMYIFLGTIYAAEALCLLNRPNEAAEHLLVYMPDGNNVKL
PYSQEDCENWTVEKVSDTEESNGGTTPVVTPLSTADESLAPVFSSPEEARGLFCANFAAN
FALLGDFEQAQRFLTMAFSDIPNSPQAILTAIYVDIKCGDTHDALVKLRQHRGVRFVPGN
LTLNGSC
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atggattccccctcagcgtcagtggcattgaatactagggacggatcgccgtccgcggcg
gtgggtgaggacgacggtgctctgttcgcggagggtcttgctaaggaggctgctgtgctt
tttcagagtggaaagttcgcggattgtttgaaaattttgaatcagatattgcagcagaag
gaaaatgatccgaaggtatgtcataatgttgccattgtggagagcttacaagatggatgc
tcagatcctagaaggcttatcaaagcactcgaaaagatcaaggaacaaagtgaagaactt
gcttgtgcatctggagaacaagaggtttccagcaacaatggaagtgaacacacttccagc
attagaggaaataatactccccggcatcctatttcgtcaattgtgtacaatgatgaatta
gatacctcagtggcaactttcaacatagcagtcatctggtaccatcttcatgaatacgca
agatcgttctcatatttggacactttgtatcagaccattgaacctattgacgaggggaca
gctctccgtatctgtcttttactgcttgacgtcgcgttactatctcataatgcatcaaga
tcttccgatgtgataagctacatagaaaggattttttttgccagtagtccgggcaatcaa
gcagataatggatcctcggcacaccaacaacctctattagtttcaaaatctacgtcactt
cccaacaatttgacccttcatgatggttctcaccatgattctactccaaatgattcctta
accagaacattatcagaggaagcacttgaagatgaacctttgcctgtactatcctctctt
gacataagtggacagaatcttcaaagacctggcattgtctctgctaatgatcttcaaaga
atccaaccagagggttcaatatcaactgctgatttaaggcttaagttacacctttacaag
gttcgctttctgctcctgaccaggaacctgaaagcagccaaacgcgaggtgaagatggct
atgaatctggctcgtggcaaagattatcccctggctctctacctaaagtcacagcttgaa
tatgctcgtggaaaccaccggaaagcaatcaagctgttgatggcatcaagtaacagcatc
gagatgggaatctctagtatgtactacaatgatctcggctgcatctactaccggctgggt
aagcagcatacatcaggagtacttttttccaaagccttaagtaatagctcagctgtgcgg
aaggagaagtctccaaatcttctaactttgtctcaggataaatccctcctgattacgtat
aattgtggtattcaatcattggcctgtggcagaccttttcatgcagctcgctgttttcaa
atggcaagccttatcttctataacagacctcttctatggctaagaattgctgagtgctgt
ttgatggccctagacaagggactgataaagtcttcctctgcatctgcgatttctgaggtt
ggagtcaatgtcattggcaaggggaaatggcgacagcttgctctaagatacggcccatcc
aatggccatggaatatatgttggaataaacagttcagttaaaggtgatggcagacagcct
gatctctcgatggctcttgcctggcagtctcttgtcaatgctttgtacttattagattct
tcggaagtattcaaggctgataaggctcctgtttctgaggaaaaagggttgggagaggca
cctttatcgcagagttcaaatctcaagaatgccactggcggtgattccaaagcagctact
gtagcgtctggctcatgtcaagctaatgccaatggtgaagcgaaagagcacaagggtgga
caaaatctggctggcacattggccaactccgtccttgattacgaacatattcgcatgaag
gagaacctgatgataagacaagctgtgctggctgatttagcatttgtagagctggcacta
ggagatcctttgaaagccctttcaacagcaagatctctactagaacttcctgactgctcg
aagatgtacatattcttaggcaccatatacgctgcagaggctttatgcctgttaaatagg
ccaaatgaagctgctgagcatttgctggtgtacatgcctgacggtaacaatgtcaagctt
ccatatagccaagaggactgtgagaactggacagtggaaaaagtgtctgacaccgaagag
tcaaatggtggcacaacacccgttgttactcctctctcaacagcagatgaatccctagcc
ccggtgttttccagccctgaggaagctcggggactgttttgtgcaaattttgctgccaat
tttgcgctgctgggagactttgagcaggctcaacgatttctaaccatggcgttttctgat
ataccaaatagtccccaagctattcttactgcgatttatgttgatataaagtgcggtgac
actcatgatgctcttgttaagttgagacagcacagaggagtcagatttgttcctgggaat
ctgacgttgaacggaagctgttga
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