Salvia splendens (scarlet sage): 121796315
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Entry
121796315 CDS
T07627
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121796315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121796315
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121796315
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121796315
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Phage_TTP_11
Motif
Other DBs
NCBI-GeneID:
121796315
NCBI-ProteinID:
XP_042051080
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All DBs
Position
3:44910483..44917911
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AA seq
576 aa
AA seq
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MSGVLSSGLNGSNSNIPDNAGRAFATSFSAQSGSSGAALNQSGAGNLQGLHNIHNSFSLS
NMPGPYASRNSGNIGGLPNGVQQAPGSVSNGRYGINSLPNAISQLSLGSSHGHSGLNNTG
GPGVLPNMGNTGRIANTIGGLVGGGNASRGSSSTGVGNIPGLASRLNLTAPQVVSMLGNS
YSGAGVPLSQNQFQAGNNSFSFMALLNESNAHDNATFDVNDFPQLSGRPPSAGGSHGQIG
MMQKHNIGFGQQNQEFSIQNEDFPALPGYKGGLNVGGSAEYTMNAHQKEQIHDNMTNLMQ
QSQQLSMGRSSGFNFGGSYSSHHPQQHRASSINGSGVSYLTSGNSDLHFHGPEYQQFQQS
QSRFINPFRDKDMKATPGSQSALDQYGIVGLLSVIKMVKPALSTLALGLDLTTLGLNLNS
SETLNKKFASPWSDEPVRGEPEFSVPECYYTKQTPPLKGEEYYLLPCSLRVFYLYLQQTY
FARFRPETLFYIFYSMPKDEAQLFAANELYNRGWFFHKDLRLWFTRVKNMEPLVKTNSYE
RGYYFCFDPNLWQTARKDNFVLQYEMVEKRPALPQQ
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggggtactaagttctggtttgaatggatcgaattcaaatattccggataatgct
ggaagagcttttgcaacttccttttctgcacaatcaggttcatctggagctgccttaaac
cagtccggtgcaggtaatcttcaggggcttcacaatatccataatagctttagcctgtca
aacatgcccgggccttatgcatcaagaaattcgggaaatattggtggtcttccaaatggt
gttcaacaagctccaggaagcgtgtctaatgggagatatggaataaatagtctccctaat
gcaatttctcagctatctttgggaagttcacatggacattcaggtcttaataatacaggg
ggcccaggtgtgcttccaaatatgggaaatacaggaagaattgcaaatactattggtggt
cttgtgggcgggggcaatgcttcaagggggtcaagctctacgggcgttggaaacatccct
ggtcttgcttcgcgtttgaatctgacagctccgcaggtggtatccatgctgggaaattct
tattctggtgctggtgtgccactttctcaaaaccaatttcaagctgggaataatagtttt
agttttatggcattactaaatgagtcaaatgcccacgacaatgctacttttgatgtaaat
gattttcctcagctatcagggcgtcccccttcagctggtggctctcatggtcaaataggt
atgatgcaaaagcataacatcggttttggtcaacagaaccaagaattcagcatccaaaat
gaagatttccctgctttaccgggatacaaaggcggtcttaatgttggtggtagtgctgaa
tataccatgaatgctcaccaaaaagaacaaattcacgacaatatgacaaatttaatgcag
cagtctcagcaattatctatggggaggtcttctggttttaattttggtggctcatattca
tcacatcatcctcaacaacatcgtgcttcctcaataaatggatcaggggtttcctatcta
acatcgggcaactcagatcttcattttcatggtcctgagtatcagcaatttcagcagtcc
caatctcgtttcataaatccatttagagataaagacatgaaagcgacgccgggatcccaa
agtgcactggatcaatatgggattgttggtctgttaagcgtcataaaaatggtaaagcca
gctttgagcactcttgctctgggacttgatctgacgaccctaggtttaaatttgaactca
tctgagactcttaacaagaaatttgcatccccgtggtccgatgaacctgtcagaggagaa
cctgagttcagtgtgccggagtgctattatactaaacagactcctcctttaaagggggaa
gaatattatttgttaccatgctctctaagggtgttttatttgtatttacagcaaacctat
ttcgcaagattccgtccagaaacattattttacatcttttacagcatgccaaaagatgag
gcacaactttttgcagcaaacgaactgtacaacagaggatggtttttccacaaagatctg
aggctctggtttacgcgggtgaagaatatggaacctctggtcaaaacaaacagttacgag
aggggttactacttctgtttcgaccccaatctgtggcaaacagcaagaaaggataacttt
gtcctgcaatatgaaatggttgagaaaagacctgcgctacctcagcaataa
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