KEGG   Salvia splendens (scarlet sage): 121796318
Entry
121796318         CDS       T07627                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit 4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
sspl  Salvia splendens (scarlet sage)
Pathway
sspl03020  RNA polymerase
sspl03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sspl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    121796318
  09124 Replication and repair
   03420 Nucleotide excision repair
    121796318
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sspl03021]
    121796318
   03400 DNA repair and recombination proteins [BR:sspl03400]
    121796318
Transcription machinery [BR:sspl03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     121796318
DNA repair and recombination proteins [BR:sspl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      121796318
SSDB
Motif
Pfam: RNA_pol_Rpb4 TRF L_PA-C-like DUF5100 DUF7293
Other DBs
NCBI-GeneID: 121796318
NCBI-ProteinID: XP_042051090
LinkDB
Position
1:complement(13958790..13960625)
AA seq 138 aa
MSAEEEENAAELKIPDEFLKAKCLMNCEVSLILEHKYEQLQQMADDPMNQMSQVFEKSLQ
YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHD
DEAIEKMLNDLSLIKKFE
NT seq 417 nt   +upstreamnt  +downstreamnt
atgtcggccgaagaagaggagaacgccgctgagctcaaaatacccgatgaatttttgaaa
gccaaatgtcttatgaattgtgaagtttcccttatacttgaacataaatatgagcagctt
cagcagatggctgatgatccaatgaatcagatgtctcaggtgtttgagaaatcactccaa
tatgtgaagcgttttagccgatacaagaaccctgatgctgtcagacaagttcgagaaatt
cttagcagatatcagcttgctgagttcgagctctgtgtacttgggaacctctgtcccgaa
acagtggaagaagctatagctatggttccgtccatcaagacgagaggaagagcgcatgac
gatgaggcaattgagaagatgttgaacgatctctccttgatcaaaaaatttgagtag

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