Salvia splendens (scarlet sage): 121797479
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Entry
121797479 CDS
T07627
Name
(RefSeq) WD repeat-containing protein 43-like
KO
K14546
U3 small nucleolar RNA-associated protein 5
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121797479
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sspl03009
]
121797479
Ribosome biogenesis [BR:
sspl03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
121797479
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Beta-prop_IFT122_1st
Beta-prop_THOC3
Beta-prop_WDR5
WD40_CDC20-Fz
Beta-prop_WDR3_1st
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
WD40_WDHD1_1st
Utp12
WDR55
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_TEP1_2nd
Beta-prop_ACSF4
WDR90_beta-prop_4th
Beta-prop_EML
WD40_MABP1-WDR62_2nd
CFAP251_N
EIF3I
WD40_Gbeta
Beta-prop_VPS8
PQQ_2
Beta-prop_Vps41
Beta-prop_HPS5
NBCH_WD40
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
121797479
NCBI-ProteinID:
XP_042052176
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Position
3:complement(41536867..41541471)
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AA seq
599 aa
AA seq
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MVSSNIRDVLTSFSPNLDLFSITLGDGRVKIWDTAKNQVQSEFADLDSTETKSVFGNQEG
GHLSMDYTCMKWFSLEKKKKRKLGSSLLLLGTGGGDVLALDVAAGQLKWRVNNCHPGGVS
AISFPAHGSHIYTAGADGMVCEIEAMSGNLLNKFSAASRAISSLAISPDGRMIATAASQL
KIFNSTNHKKLQKFSGHPGAVRCMIFSEDGKYVLSSAVGERYIAVWEIDGSKKKSGSVVL
AMDHPAVFLDSKFVNAGDAHDASLCVLAISEIGVCYFWHGKTIDELRNSKPTKIFVPSDD
EVLQKHKGGIPNVFAGKLQNISMPASGHVFLAYGLLIKPTFEKVMVQPGTDLQLSFSHDG
ILLPTSKPQNSRKTSHIRNEVTALDPSNIGGALGPVPQMLDLVTGKSEAKPVGVKEKDEL
DTVTLCMEDQLRSLGILSSMDDALSSTLVSKYLKGINLDASTPQKKVKTTVWSLEPSDAF
DLLKGLVDVWQSRSHSSKYVLPWISCILVCHSGFIKSKEPKFLDSLYKLANAKAPAMNSL
LQLSGRLQLVSAKIDKAVNNKSLVSERDVEHEDESEDEDVDEVVYGVDDDSQTDSESDD
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggtgtcgtcaaatataagagatgttttaacctcattcagtccgaatttggacttgttt
tccatcactctcggtgatggtcgggtgaaaatatgggacaccgcgaagaatcaggtgcag
tctgaatttgctgatcttgattcgacagagacgaagagtgtctttgggaatcaggaggga
gggcacctttccatggattatacatgtatgaagtggttttctctggagaaaaagaagaaa
agaaagcttgggagttccctgctgttgttggggactggaggtggggatgttctcgcgttg
gatgtggctgccggtcagttgaaatggagggttaacaattgccatccagggggtgtcagt
gctatttcatttcctgcacatggctcacacatttacacggcgggtgcagatggaatggtt
tgtgagatagaagcaatgtcagggaacttgttaaataagttcagtgctgcttcaagggcc
atatcttcgttagctatctccccagatgggagaatgatagcaactgcggcatctcagtta
aagattttcaattccacaaaccataaaaagctgcagaaattttctggccatcccggagct
gtgagatgcatgattttctccgaagatggcaaatatgtgctttcttcagcagtaggagaa
cgatatattgcagtttgggaaattgatggtagcaaaaagaaatctggttccgttgtcctt
gcgatggaccatcctgctgtattcttggacagcaagtttgtcaacgccggcgatgcacat
gatgccagtctatgtgttttggctatatcggaaattggtgtctgctatttttggcatggg
aagactattgatgagctgcgcaattctaaacctacaaagatattcgtaccttctgatgat
gaagttctacagaaacacaaggggggaattcccaatgtatttgctggaaagctacagaat
atttctatgcctgcatctggtcacgtgttcctcgcatacggtttgcttataaaaccaaca
tttgaaaaagttatggttcagcctggaacagacttacaattaagtttttcacacgatggt
atcctattaccaaccagcaaaccccaaaattctagaaaaacttcgcacatccgtaacgaa
gttactgctctcgatccctcaaacatagggggtgcattaggccctgtgcctcagatgctt
gatttggttactggaaagagtgaagccaaacctgttggagtcaaagaaaaagatgaatta
gacactgttacgctgtgcatggaggatcagctgagatctttagggatactcagcagtatg
gatgatgcattaagctcgacattggtctctaaatacctgaagggcatcaatcttgatgca
agtacaccacagaaaaaggtgaagactactgtttggtccctggaacctagtgatgcattc
gaccttttaaaaggattggtggatgtttggcaatccagatcacacagcagcaagtatgtt
ctcccttggatatcttgtattttggtgtgtcacagtggtttcatcaaatctaaggaacca
aaatttcttgattccttatacaagcttgccaacgccaaagcaccagcaatgaactcttta
ctccagttatctggtcgtttgcaactcgtgtctgctaagattgacaaggctgtgaacaac
aagagtcttgtctcagaacgtgatgttgagcacgaggatgaaagcgaagatgaagatgtc
gatgaagttgtttatggagttgatgatgattctcagacagacagtgagagtgatgattag
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