Salvia splendens (scarlet sage): 121797655
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Entry
121797655 CDS
T07627
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121797655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121797655
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121797655
mRNA degradation factors
5'-3' decay
Lsm complex
121797655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
121797655
NCBI-ProteinID:
XP_042052230
LinkDB
All DBs
Position
4:complement(698852..700849)
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AA seq
128 aa
AA seq
DB search
MSWAGPEDVFLSTSLASYLDKKLLVLLRDGRKLLGILRSFDQFANAVLEGAWERVIVGGL
YCDIPLGLYIIRGENVVLIGELDLDKEELPSHMTRVSSEEIKRAQKAEREASELKGMMNK
RMDFLDMD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgggctggccctgaagatgtctttctctcgacttctcttgctagctatcttgac
aagaaacttcttgtattacttcgagatggcaggaaactattagggatccttcgttccttt
gaccagtttgccaatgctgtcctagagggcgcgtgggagcgtgttattgtaggcggactt
tattgcgatatcccattgggtctgtacataatccgtggagaaaacgttgtcttaatcggg
gaactggacttggacaaagaggagcttccgtctcacatgacccgcgtttcatcggaagaa
ataaagagggcgcagaaggcagaaagagaagcttcggagctcaagggtatgatgaacaag
aggatggacttcctcgatatggattga
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