Salvia splendens (scarlet sage): 121797935
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Entry
121797935 CDS
T07627
Name
(RefSeq) lys-63-specific deubiquitinase BRCC36-like
KO
K11864
BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121797935
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
sspl01002
]
121797935
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sspl04121
]
121797935
03036 Chromosome and associated proteins [BR:
sspl03036
]
121797935
03400 DNA repair and recombination proteins [BR:
sspl03400
]
121797935
Peptidases and inhibitors [BR:
sspl01002
]
Metallo peptidases
Family M67
121797935
Ubiquitin system [BR:
sspl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
121797935
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
121797935
BRISC complex
121797935
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
BRISC complex
121797935
DNA repair and recombination proteins [BR:
sspl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
121797935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCC36_C
JAB
Prok-JAB
UPF0172
Motif
Other DBs
NCBI-GeneID:
121797935
NCBI-ProteinID:
XP_042052652
LinkDB
All DBs
Position
4:complement(3642426..3647910)
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AA seq
428 aa
AA seq
DB search
MSLTSVKMSEDVWLTCLTHALSTETEEIMGLLLGDIQTSKNGNVTALIWGALPQPRSDRQ
KDRVETNPEQLTAASVHAERMTMETGTTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLD
SGFIGLIFSCFSEDAQKVGRIQVIAFQSMDGKQGHMMKPLSLTPVQKSSVIDLDSSMSSS
DNAIALFGSSKGETMEQDTGDSEAASRASTGSGKSPRLGGFFANANAKTGNNSHANSLND
AIHDFDPMDMSEGMQEAMHLSNLEMSGAEYIRKEILLHVLPTPSLLSLDSPLSSFTNLQR
VLYEEEKTAYNQAMAQNTRDGKIHPLSFIHHTSTYKSSMCKMIEYCLSPAMTVLQDRLRE
NEIQLNLLTEEANQLESEVARGSPSNSSPRSPSQGHRSSSSGHRDLYPTDFSHLKNVSGS
RSRRGSQS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgtctctaacgagtgtgaagatgtcggaggatgtgtggttgacgtgcctcacccatgca
ttgtccactgagactgaggagatcatgggccttcttcttggtgatattcagacttctaag
aatggtaatgttactgcattgatttggggagcacttccacaaccacgttctgatcgacag
aaggatagagtagagactaacccagagcagctgactgctgcatcagttcatgctgagaga
atgacgatggaaacaggaactacaactagagtgattggctggtatcattcacaccctcat
atcacagtcctaccatctcatgttgatgtgcgaactcaagcaatgtatcagctattggat
tctgggtttattggtttgatattttcctgtttcagtgaagatgctcaaaaggtcggaagg
attcaagtcattgcatttcagtctatggatgggaagcagggtcacatgatgaaacctctt
tctctcactcctgttcaaaaaagttctgttatagatttagattcttccatgagttcttca
gacaatgcaattgccttgtttggttcttccaaaggagaaaccatggaacaagacactgga
gattcagaggcagccagtagggcttctacgggctcggggaaatcaccacgtttgggaggt
ttttttgctaatgctaatgctaaaacaggaaacaatagtcatgctaacagtttgaatgat
gcaattcatgattttgatcccatggatatgtctgagggtatgcaagaagcaatgcatttg
tcaaatttggagatgagtggcgcagaatatatcagaaaggaaattcttcttcatgttctc
cctacaccatcccttctgagtcttgattctcctttgtcatcatttacaaatctccaacgg
gtgctgtatgaagaggagaagactgcgtacaatcaagcaatggcacaaaacacgagggat
ggaaaaattcaccccctctctttcattcatcacacctccacgtacaagtcttccatgtgt
aaaatgatcgaatactgcttgagtcccgccatgactgttcttcaagatcgattgagagaa
aatgaaattcagttaaatctgcttacggaagaagccaaccaactggaatcagaggttgct
agagggagtccctcaaattcatccccccgctctccatctcaagggcacaggagtagttcc
tcaggtcacagggacctgtatccgacggactttagccacctaaaaaatgtcagtggtagc
cggagccgaagagggtcccagtcgtga
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