Salvia splendens (scarlet sage): 121798680
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Entry
121798680 CDS
T07627
Name
(RefSeq) probable splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121798680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspl03021
]
121798680
03041 Spliceosome [BR:
sspl03041
]
121798680
03036 Chromosome and associated proteins [BR:
sspl03036
]
121798680
Transcription machinery [BR:
sspl03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
121798680
Spliceosome [BR:
sspl03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
121798680
Complex B
121798680
Complex C
U2 SnRNP specific factors
121798680
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
121798680
TFTC complex
121798680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
121798680
NCBI-ProteinID:
XP_042053736
LinkDB
All DBs
Position
4:13356360..13363262
Genome browser
AA seq
1372 aa
AA seq
DB search
MAVSEEQSASSSSSRPNASTLRSPSDAFYLAKTVLRGSVVLQAVSGHFRSPSSYDVVFGK
ESSIELVIIDQDGIVQSISEQPVFGTIKDLAVLPWNNKFHVQNPKILGKDILLVVSDSGK
LSFLTFCNEMHRFFPLSHVQLSDPGNSRHQVGRMLAVDSSGCYVAVSAYEDQLAIFSVSM
SESGDIIEKKIFVPPGKDGHLESAKGFTNISGTIWSMCFISRDYNQTGQEQNPLLAILLN
RRGSFYRNELMLLEWDIVEQAIHVVYQFAEAGPLAYHIVEVPQSHGFAFLFRAGDIVLMD
FRNVQSPSCVYRTSLNFTPVEETKFKNIIRIPDIMDEEGIYSVAASALLELGDINKSDDP
MNIDDYSNVLPGSNYVCSWSWEPIITNAPRILFSADSGDLYAIEVLFESDGPRVILSDCL
YKGLPCNALLWLDGGFLAAIVDMADGMILKFEEGFLQYRSSIQNIAPILDMCIVDYPDEK
HDQMFACSGIASEGSLRIIRSGISVEKLLKTTPIYQGVTGTWTVKLKVSDPYHSFLVLSF
VEETRVLSVGVSFSDVTDLVGFRPDVCTLACGVVADGVLVQIYQSGVRLCLPVGAAVPPD
GIPLSSPVCTSWFPENMTISLGAVGQSIIVVATSSPSFLFILGIRTLSAYHYNIYQMQCV
KLQNELSCISIPQKHPDLNKVLMDFSVNNLVTTSPSGDHVDNIFVIGTHKPSVEVVSFTH
EKGLQVLATGTISLTNTMGTSVSGCVPQDVRLVIVDRPYVLSGLRNGMLLRFEWPSVSTP
FPIRPPAQQNFVGTSTINFQVSSNSVSSKNEVPMSMSSTSYSTEGDLPVDLQLIAVRRIG
ITPVFLVSLSDSIDADMIALSDRPWLLQTARHSLSYTSISFQPSTHVTPVCSTECPRGIL
FVAENSLHLVEMVPSKRLNVQKFHLGGTPRKVLYHNESRLLLVMRTELDNDSCSSDVCCV
DSLSGSILESFKFEPGETGKCMEFVKVGNENVLVIGTSSSAGPAIMPSGEAESTKGRLVV
LCLEHLQNSDTGSMTQRSSPIGSHAAEQLSCSSICSSPDDNSSDGVKLEETEAWHLRLAY
SAVWPGLVTAVCPYLDRYFLASAGNSFYVCGFPNDNSQRVRRLAVGRTRFTIMTLTAHFT
RIAVGDCRDGVLFYSYHEDSRKLEQIYCDPVQRLVADCVLMDDDTAFVSDRKGSVVVLSS
ANHLEDNVSPERNLTLSCSYYMGEIAMSMRKGSFSYKLPADDVLRDCDAGSTNNNLSRNC
VMASTLLGSIIIFIPMTREEYELLKDVQARLVIDPLTTPILGNDHNEFRSRECRGGVPKI
LDGDILAQFLELTSMQQEGVLALPANLSQKPPTPVMVNQVVRLLERVHYALN
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atggcggtttctgaagaacaatctgcatcgtcgtcgtcatcacgcccaaatgcatctacc
ctccgatcaccttccgatgcattttacttggccaaaacagtcctcagaggcagcgttgtt
cttcaagctgtctccggccacttccgctccccatcttcctacgacgtcgtcttcggaaag
gaatcttcaatagaactggtgataattgatcaagatgggattgttcaatctatttctgaa
caacctgtgtttggcactataaaagatcttgcagtccttccctggaacaacaagtttcat
gtgcagaatcctaagatactggggaaggacattttacttgtggtttctgattccggaaag
ctttcatttctgaccttttgcaatgaaatgcacaggtttttccctttaagccatgttcaa
ctttctgatcctggaaattcaaggcatcaagttggaaggatgctggcggttgattccagt
ggttgttatgttgctgttagtgcgtatgaggatcagttggctattttttcggtctctatg
tctgaaagtggtgatatcattgagaagaaaatctttgttcctcctggaaaagatggacac
ttggaatctgcaaaaggttttactaatatttctggtactatatggagcatgtgcttcatc
tcgcgcgattacaatcaaactggacaagaacaaaatcctttgctggccattcttcttaat
aggcgcggatctttttatcggaatgagcttatgttgttagaatgggacattgtggaacaa
gctatacatgtggtatatcaatttgcagaagctggaccgttagcttatcatatagttgaa
gtccctcagtctcatgggtttgccttcctctttagggccggtgatattgtcctaatggat
ttcaggaatgttcagagcccttcttgtgtctacaggacaagcttaaatttcacaccggtg
gaggaaacgaaattcaaaaacattattagaataccagatattatggatgaagaaggtatt
tatagtgtcgctgcctctgctttactggagctcggtgacataaataaaagtgatgatcca
atgaatatcgatgactatagtaacgtactacctggttctaattatgtttgctcatggagt
tgggaacctattataactaatgctcctagaatattatttagtgctgactctggggatctc
tatgcaattgaagtcctttttgagtcagatggccctagagtaattttatctgattgtctt
tataaaggtctaccatgcaatgctctgttatggcttgatggtggatttctggcagctatt
gttgatatggctgatgggatgatcttaaaatttgaagagggatttctacagtacagaagt
tcaattcaaaacatcgcaccaatcttggacatgtgtattgttgattatcctgatgaaaaa
catgatcaaatgtttgcctgctctgggatagcatctgagggatccttaaggatcattcgg
agtggtatcagtgtggagaaattactgaaaactactccaatttatcaaggtgtaactggt
acatggactgttaaattgaaagtttcggatccttaccattcttttctagtactgtcattt
gtggaagagaccagagttctttcagttggtgttagcttttctgatgtaactgacttggtg
ggttttaggcctgatgtttgtactttggcttgtggtgttgtggctgatggtgtattagtt
caaatttaccaatctggagttagactttgtttgcccgttggagcagcagtgcctcctgat
ggtattccattgtcatctccagtatgcacatcatggttccctgaaaatatgactataagt
ctcggagctgttgggcagagcataatagttgtagcgacatccagtccatccttcttattc
atccttggtattagaactttgtcggcatatcattacaatatttatcaaatgcagtgtgtg
aaattgcagaatgagttatcttgtatctcaatacctcagaagcaccctgatctgaataaa
gttttgatggatttttcagtcaataatcttgtgacaacctctccgtctggagatcatgtt
gataatatatttgttattggtactcataagccttcagtagaagttgtgtcctttacacat
gagaaggggctacaagttcttgccacagggaccatatcactaacaaacactatggggact
tctgttagtgggtgtgttccacaagatgtgagacttgttatagttgaccgcccgtatgtt
ctttcaggattaaggaatggaatgctacttaggtttgagtggcctagtgtctcaacaccc
tttccaattaggccacctgctcagcagaattttgttggtacctctacaattaacttccag
gtctcgtcaaactcggtctcttctaagaatgaagtaccaatgtctatgtccagtacatcc
tatagtactgaaggagacttacccgttgatcttcagctgattgctgtacgtcgtattggt
atcacacctgttttcttggtttcattaagtgattcaattgatgctgatatgattgctctc
agtgataggccttggctattgcagactgcaagacacagcctatcttatacatctatatca
tttcagccttctactcatgtcactcctgtatgttcgactgaatgccctagaggaatcttg
tttgttgcggaaaatagtctccacttggtggaaatggtgccgagtaagaggcttaatgtg
cagaaatttcatcttggcggcaccccaaggaaagttttatatcacaacgaaagcaggctg
ttgcttgtcatgaggacagagttggataatgattcatgctcatcggatgtttgttgtgtg
gattctttgagtggctcaattttggaatctttcaaatttgaacctggggagacggggaaa
tgcatggagtttgtaaaagttgggaatgagaacgtgttggtgattggaactagctcatct
gctggaccagctattatgccaagtggtgaagctgagagtacaaaaggccgcttggtggtt
ctttgccttgaacacttacaaaattctgacactggttctatgacccagagaagttcacct
attggtagtcatgctgcagaacagctttcgtgcagtagtatctgtagtagtccagatgat
aatagctctgatggtgtcaaacttgaagaaactgaagcctggcacttacgcttggcctat
tcagctgtctggccagggttggttaccgctgtctgcccttaccttgaccgctacttcttg
gcttccgctggtaattctttttatgtgtgtggttttccgaatgataactctcaaagggtg
agaaggctggcagttggaagaacacgttttacgataatgactctgactgcacatttcacc
aggatagctgttggtgattgccgagatggtgttcttttctattcataccatgaggattcc
agaaaattggagcaaatatattgtgatcctgtccagagactggtcgctgattgtgtcctg
atggatgatgatactgcctttgtttcagaccggaaggggagtgttgttgtcttatcgtct
gcaaatcatttagaagacaatgttagtccagaacggaacttgactctaagctgttcttat
tatatgggtgaaattgccatgagcatgaggaagggatcattctcatacaaacttccagca
gatgatgtgctaagggactgtgatgctggtagtactaacaataatttgtcaagaaattgt
gtcatggcatcgacactgttgggaagcataataatcttcattcctatgacaagggaggaa
tacgagctattaaaagatgttcaggctaggttggttattgaccctcttactactccaatc
ttgggaaatgatcacaatgagttccgcagccgcgaatgtcggggtggggtgcctaagata
ctggatggggacattctggctcaattcttagagctgacaagtatgcaacaagagggtgtt
ctggcgttacctgcaaacctaagccagaaacctcccactccagtaatggttaatcaggtt
gttcgcctgcttgagcgagttcactatgccttaaactaa
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integrated database retrieval system
