Salvia splendens (scarlet sage): 121799034
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Entry
121799034 CDS
T07627
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38-like
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03013
Nucleocytoplasmic transport
sspl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121799034
03015 mRNA surveillance pathway
121799034
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121799034
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121799034
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
121799034
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
121799034
NCBI-ProteinID:
XP_042054286
LinkDB
All DBs
Position
4:complement(19658075..19662313)
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AA seq
484 aa
AA seq
DB search
MADNVSSSSSTSATITPPETKSWADVADEEAAAEIKLDSLVVDESKPQGALGLTNPDDST
IEAVTSGDTPYTSAKRFEDLNLSPELLKGLYVEMKFEQPSKIQAISLPMILTPPYKNLIA
QAHNGSGKTTCFVLGMLSRVDPNVREPQALCICPTRELAIQNMEVLLKMGKFTGITSELA
LPPDQANYIPIQKRPPITAQVIIGTPGTFSKWLQHKKLGLSKMKILVFDEADHMLAMSGF
RDESIRIMKAIAKASSNCQVLLFSATFDDDVKDFSSKIAGEIFKREPNQMFVKKEELSLE
SVKQYKVHCPDELSKIMVIKDQILELGEKVGQAIVFVKSRNAASMLHQALVKLGYEVTTI
QGALNIEDRDKIIKEFKEGLTQVLIATDVLARGFDQSQVNLVINFDLPVQYGRYSEPDNE
VYLHRVGRAGRFGRRGAVFNLLCLDSDDMIMDKIEKHFNSQITEVAPWNSREAFEDALRR
AGLL
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaacgtgagcagcagctcgtctaccagcgccacgattactccgccggagacg
aagtcgtgggcggatgtcgccgacgaggaggcggctgcggagatcaaattggactcgttg
gttgtcgacgagtccaaaccacagggtgcactcggcctcaccaatcccgacgattccact
atcgaagcggttacatccggggacactccgtatacctcagcgaagagattcgaagacttg
aacttgtcccctgagctgctgaaggggctttatgttgagatgaagtttgagcaacccagc
aagatccaggctatcagtttacccatgatcttaactcctccttacaagaatttaatagct
caagctcataatggatccgggaagaccacttgcttcgtgcttggtatgttgagccgagtt
gatccgaatgtccgtgaacctcaggctctctgtatttgccccaccagggagttagccatt
cagaatatggaagtacttctgaagatggggaagttcactgggataacctcagaattagct
ttaccacctgatcaagcaaactacatcccaatacaaaagaggccacctattacagcgcaa
gtaatcatcggcacaccaggcacattctctaaatggttgcagcacaagaaattgggtttg
agtaaaatgaagattcttgtgtttgatgaggcagaccacatgttggcaatgagtggattc
cgagatgaatcaatcaggataatgaaggctattgctaaagccagttccaattgccaggtc
ctgttattctcagctaccttcgatgatgatgtgaaggacttttcatccaaaatagctgga
gagatctttaaaagagaacctaaccaaatgtttgtcaaaaaggaagaactatctctggag
tctgtaaaacagtacaaggttcattgtcctgacgagctttcaaagatcatggtgattaaa
gaccaaatacttgaacttggagagaaagtggggcaggcaattgtctttgtcaaatccagg
aatgctgcatctatgttgcaccaagctttggtcaaacttggctatgaggtgactacgatt
caaggtgctctgaatattgaggacagggacaaaatcataaaagagttcaaagaaggtctg
acccaagttctaatcgcaactgatgttcttgctcgaggttttgaccagagccaggttaat
ttggttatcaattttgatcttcctgtgcaatatggtcgttattctgagcctgacaatgag
gtttacttgcaccgggttggtagagctgggcgctttggccgcagaggtgctgtgttcaac
ttgctttgtctcgacagcgatgatatgattatggacaagattgagaaacacttcaactct
cagattactgaggtggctccttggaatagtcgggaagcattcgaggatgctctacggcgt
gctgggctattgtga
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