Salvia splendens (scarlet sage): 121799258
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Entry
121799258 CDS
T07627
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like
KO
K08775
breast cancer 2 susceptibility protein
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03440
Homologous recombination
sspl03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121799258
03460 Fanconi anemia pathway
121799258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sspl04121
]
121799258
03036 Chromosome and associated proteins [BR:
sspl03036
]
121799258
03400 DNA repair and recombination proteins [BR:
sspl03400
]
121799258
Ubiquitin system [BR:
sspl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
121799258
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
121799258
DNA repair and recombination proteins [BR:
sspl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
121799258
FA (Fanconi anemia) pathway
Downstream FA components
121799258
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_OB1
BRCA2
BRCA-2_helical
Motif
Other DBs
NCBI-GeneID:
121799258
NCBI-ProteinID:
XP_042054512
LinkDB
All DBs
Position
4:complement(26562942..26568999)
Genome browser
AA seq
1127 aa
AA seq
DB search
MSTWRIFSDDRNDFRWENAVQHLRLEEFSPAVAEDTRRFPSMADLLLLGSSKLLENGKSN
VEEQPTFRTGLGKSVEVKQSSIARARSVLGEVDCALIDSGQLDGREKGFASFRPISNMNS
MESAVMSKSVFHSAPENDVHMKNSMFQTGLGKTVSISSAGLLRAKALLGLDGNCDQEQRQ
KQTISSELLSSDNPSHLDSQKLSKLNFSSSAKAGEYPRVKSSTHPNESMNFPECMTAASE
LPQVKFQTAGGRSISVSSDALQRAKSLLGNLEVDSFLNEASTANPLFSVIDGKPSCVSNQ
KDDFTSPFLHHQAIENGGHPLRKFSSPPSSSSYRRNSFGKSERLQPGNNLIAQFDAEAAG
NSCKRHYNGFTGDRNPPKKKSCSNMDGLEFAILPKSDPSKGSSNTALVDISNTMNIDNKQ
YSGEKKRLRGISSVSPFKKPRSSFVTPLKKTNLSDTNGLCSPAPKESPCKQRVSLRYPSQ
GQRVYLKEYFSQPPLQEKFGNLPEYVKSMNPVAAESFTIRNETSSECIGPEAFYTMLLQS
GASIQHMTKEWVTNHYKWIIWKLTSYERSYAEKFSGKLLTVSSVLEELLYRYEREVNHGH
RSLIKKMLDGDVPPSSMMVLCVSSVCEDHDPQCGNQSVPQEGGYVNASRIELTDGWYAVT
ALLDEQLSQKLASKKLFLGQKIRIWGAKLSGWLGPVSLFQASSTTSLLLHINGTYRCHWA
ERLGLCKRAGDPLAFRCIKGNGGVVPSTLVRVTRTYPVLYRERLSNGSFVVRSERLEAKA
LQSFHQRRDLVAEGIMSSFQREAEFDVGDDHEREEGAKLMKLLETSAEPEVLMAGMSSKE
LAAFASYKAKLEAMRLSEIQKTIEKAVQDAGLGERETTPFLRLKVVGLMKKGQQECSPLK
GLVTIWNPTQKQTLELHEGQAYAVGGLVPSSSDSGILYLQTRGSTSDWLPLPPRINEQFE
SFFVPRSSTTISCLGGVPLSSEFDMVALVVYVGEVYRQGHQQKQWVFVTDESAAELFLEG
SPDVLLAINFCLPYVEFDSSVPMNSSVAGSVVGFSNLTKRPRDQVNGLWVAEATENSDYF
LSYDNGVRRHLKDAAASVSKWATPPSPIIEKLKERVLSIISNPKDRC
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacgtggcgaatattttccgacgaccgaaacgatttccgatgggaaaacgccgtt
caacacctccgattggaagaattctctcccgctgtggctgaagacactcgtcgcttccct
tccatggcggatctattgcttctaggttcttcgaagttattggagaatgggaagagcaat
gtggaggagcagccgacttttcgaacggggttggggaaatctgtggaggtgaagcagtcg
tcaattgcgagagcacgttctgttctcggtgaagtggattgcgcgttgattgattctggc
cagttggatgggagagaaaagggatttgcttcatttagaccaatatctaacatgaactcg
atggaatcagctgttatgtcaaagtctgtgtttcatagtgcaccagaaaatgatgttcat
atgaaaaattccatgtttcagacgggattaggaaaaacagtcagcatatcgtcagctggc
ttacttagggcaaaagctctgttaggcctagatggaaattgtgatcaagaacagagacaa
aaacaaacaatatcttctgagctcctttcttcagacaatccatctcatttggactcccag
aagctgagtaaattgaatttcagtagttccgccaaggcgggggaatatcctagagtgaag
tctagtactcatccaaatgaatccatgaattttccggaatgcatgactgctgcttctgaa
cttccacaagtcaaatttcaaactgctgggggaagatccatatcagtttccagtgatgca
ttgcaacgagctaaaagcttgctaggaaaccttgaggttgattcatttttaaatgaagca
agcacagccaatccactgttctcagtaattgatggaaaaccaagttgtgtatctaaccaa
aaagatgactttacctcaccatttctacaccaccaagcaatagaaaatggtggtcatccc
ttgagaaaattttcatccccccctagttcaagttcgtacaggagaaactcatttggtaag
tctgagaggctacaaccaggaaataacttgattgcacagtttgatgcggaggcagcaggc
aactcttgtaaaaggcattataatggatttactggagacagaaacccccctaagaaaaaa
tcttgctcaaacatggatggtttggaatttgcaattctgccaaagagtgatccctcaaag
gggtcatccaacacagctttggtggatatatcaaatactatgaatatagataataagcaa
tattctggagagaagaaaagacttcgagggatcagttctgtttctccattcaagaagcct
cgcagttcatttgtcaccccgttaaagaaaactaacttgtcagatactaatggtttgtgt
agtccggcaccaaaagagtctccgtgcaaacaaagggtttccttgagatacccttctcag
ggtcagcgggtttatcttaaagagtacttttcacagcctccactgcaagaaaaattcggt
aacttgccagaatatgtgaagagtatgaacccggttgctgctgaaagttttacaatacgg
aatgaaacatcttcagaatgtattgggcctgaggctttctacacaatgctattgcagtcg
ggagcttctatccaacacatgaccaaagagtgggtcacaaatcactataaatggatcata
tggaaattgacctcttatgaaagaagctatgctgaaaagttttctggaaaactgttgacc
gtctctagtgtgcttgaggaattactgtacaggtatgaaagagaagtaaatcatggacat
agatccttaatcaaaaaaatgttagatggtgatgtaccaccttcttcaatgatggtactt
tgcgtttcttctgtctgtgaagatcacgacccacagtgtggaaatcagtctgttccccag
gaaggtggctatgttaatgcgtccagaatagagttgactgatggatggtatgctgtgaca
gctctgttggatgaacagctttcccagaaacttgcttcaaagaaattgtttctgggtcag
aagatcaggatatggggagccaaactgtctgggtggcttgggcctgtttcactctttcag
gcatcatcgactacaagtttgttattgcacataaatggtacttacagatgtcattgggct
gaaagattaggactatgcaagcgtgctggtgatccattggcattcagatgcatcaagggg
aatggaggggtggtccccagcactttggtgagggtcacaaggacctatccagttctttat
agggagaggttgagtaatggaagttttgtcgtgaggtctgagaggttggaggctaaagct
ctgcagtcattccaccagaggcgtgatcttgttgctgaaggaatcatgtcctcgtttcaa
agggaagcagaatttgatgttggggatgaccatgaacgtgaagagggggccaaacttatg
aagttacttgagacttctgctgagccagaggttctcatggctgggatgagctcaaaagaa
ctagctgcttttgcttcttacaaagctaagttggaggcaatgaggctgtcagaaatccaa
aaaacgattgagaaagctgtgcaggatgctgggcttggggagagagagaccactccattt
ttgcgtcttaaagtggtgggtttgatgaaaaagggtcaacaagagtgcagtccactgaaa
ggcttggttactatatggaatcctactcagaaacagacactagagctgcatgaagggcag
gcatatgctgttggaggtcttgtaccatctagctccgattcaggcatcctttacttacaa
acaagagggtcaactagtgattggttaccattgccacccaggataaatgaacaatttgag
tcatttttcgtcccacgttcatcaactacaatatcatgtttgggaggagttcctctttcc
agcgagtttgacatggtggctctcgttgtctatgtgggagaggtgtatagacaaggtcac
cagcaaaagcagtgggtctttgtgactgatgaatccgcagctgagcttttcttggaggga
tcaccagatgtactactggccatcaacttttgcttaccctatgtcgaatttgattcatct
gtgccaatgaactccagtgttgctggatccgtggtgggattctctaatctcacaaagaga
ccaagagatcaagtaaatggcttgtgggttgctgaagctacagaaaattcagattatttt
cttagttatgataatggagttcgccggcatctaaaagacgctgctgcctcagtgtcgaag
tgggcaactcccccgagcccgataatcgagaaactcaaggaaagagttctgtctataatc
agcaatccaaaagatagatgctga
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