Salvia splendens (scarlet sage): 121799762
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Entry
121799762 CDS
T07627
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121799762
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121799762
03009 Ribosome biogenesis [BR:
sspl03009
]
121799762
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121799762
Spliceosome [BR:
sspl03041
]
Complex A
U1 snRNP components
U1 related factors
121799762
Complex B
121799762
Ribosome biogenesis [BR:
sspl03009
]
Eukaryotic type
Pre-60S particles
Helicases
121799762
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
121799762
NCBI-ProteinID:
XP_042055156
LinkDB
All DBs
Position
4:complement(36518309..36525976)
Genome browser
AA seq
1173 aa
AA seq
DB search
MATAEASPSTLGPRYAPDDPTLPEPWKGLIDGSTGLLYYWNPETNVTQYEKPTSLPPPLP
LGPPPKMNPIPGARALQPVNVQTPQSQQSIQAQPSHGQISSSSLQTQVASQTPPGQLQGS
HLGPGMQHGHLAPEQVIPQMPQQPGHQMPSQLGQMPMQSGQHGHLQSMHPMSMQQGHQAP
YPFMQPMTHAQQGQMYPGAQMGPPHGFQFAHQHPQYTMHQQKMPSQGPPSSSEHSQHLIQ
GQQLPQKQDQKIELGQRDDTDSQQGRQPGFSPAHQHLMQGQQFPHLREQKAGIPPRDDVE
NQQVNQAGFSSAQNLPQKMSMQANQNAQYGGSLVNVQPNNPSGHLQQTGTELAHPQHVSG
FQNHIGSGTMHGQQQNQSPVVSNMPYEENQFGRPKIPYLYNTPKDLNVVPNQPPLPLSRN
QQDPRIGDFPSPNVAPNLPGRLNVRGPPLPGGFGHSPGGHQFPNTAIVRPPVAMMGPSDS
IHLSAADIYRQKHEVTASGENVPPPFMTFEAAGFPPELLQEMHAAGFAAPTPIQAQSWPI
AEQSRDIVAIAKTGSGKTLGYLIPAFFHLRKLRNNPQNGPTVLVLAPTRELATQIQDEAI
KFGRSSRVSCTCLYGGASKGAQLKELDRGADIVVATPGRLNDILEMKRIDFRQVSLLVLD
EADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGSVDEL
AANKSITQHVELVPDMDKQRRLEQILRSQEPGSKIIIFCSTKKLCDHLARSLGRNFGAAA
IHGDKSQGERDWVLNQFRNGRSPILVATDVAARGLDIRDIRVVINYDFPTGVEDYVHRIG
RTGRAGATGISFTFFSEQDWKHAPDLVKVLEGANQAVPPEIRDIALRGGPGFGKDRGMMN
RFEPADGGGGRWDSGGRGGRGGMRDGGFGGRGGMRDGGFGGWGGMRDGGFGGRGGMRDSG
LGGRGGMSMRDGNFGGRGGGRDDSFGSASGPRGGWDRGGRGGHDRLNNFDGRGRGARGRG
RGRFDSNRRDGNSDRSRGRSFSRSPDRVRTWDVSRSSSRSRSRSRSRGRSRSYSRSRGRS
RSYSRSRSRSRSWSRSRSPRSSRSPRYNRSRSQSYERCERKPRKSKFDQMEPDAGIGTLP
IAPVASQQVPAVAAGDLSLPAGATVPSNPHSEL
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atggccactgccgaggcatcgccaagcacacttgggcccagatatgctccggatgatcca
acattacctgaaccttggaaaggattaattgatggaagtacaggtcttttatattactgg
aatcctgagacaaatgttactcagtacgaaaaacccacgtctctgcctccacctttgcca
cttgggccacctcctaagatgaaccctatcccaggtgctagagcattgcagccggtgaat
gttcaaacccctcaaagtcagcagagtatacaggcacagccttcacatgggcagatctcg
agctcgtctttgcagacacaggtagcatcacagacaccccctgggcagctgcaggggtct
catttggggcctggaatgcaacatggccatttagctccagaacaagtcatacctcaaatg
ccgcaacaacctggtcaccaaatgccgtctcagttggggcaaatgcctatgcagtcaggg
caacatgggcatctgcagtcaatgcacccaatgtcaatgcaacaggggcatcaagctcct
tatccttttatgcagccaatgacacatgctcagcagggacaaatgtaccctggtgcacag
atgggacctcctcatggtttccagttcgcacaccagcatccacaatatacaatgcatcaa
cagaagatgccctcacaagggccaccaagttcctcagaacattctcagcatctaattcag
gggcaacagttgcctcagaaacaagaccaaaagattgaacttggccagagagatgatact
gattctcagcagggaagacagcctgggttttctccagcacaccagcatttgatgcagggg
caacaatttcctcatctccgagagcagaaagctggaattccccctagagatgatgttgag
aatcagcaagtaaaccaggctgggttttcatcagctcagaacttgcctcagaagatgagc
atgcaagcaaaccaaaatgcacagtatggtggatcacttgttaacgtgcaaccaaacaac
ccatcagggcatttgcagcagacagggacagaattggcacacccgcaacatgtttctggg
tttcaaaatcatattggctcaggtacgatgcatggccagcagcagaaccagtcgcctgtt
gtttcaaatatgccctatgaagaaaaccaattcggaaggcctaaaattccgtatctttac
aacacccccaaagatctcaatgttgtacctaatcaaccgccattacccctgtccagaaac
cagcaggaccctagaattggagacttcccttctccaaatgttgcaccaaatcttccaggg
agattgaatgtccggggccctcctttgcctggtggctttggtcattccccaggtggccat
caattcccaaacactgctattgtgaggcctcctgtagctatgatgggaccttcagattct
attcatttatctgctgcagatatttaccgacaaaagcatgaagtgacagcctcgggcgaa
aatgttcctcctccatttatgacatttgaggctgctggttttccaccggagctgctgcag
gaaatgcatgctgctggttttgctgctcctacaccgattcaggcacaatcatggcctatt
gcagaacagagcagagacatagttgctattgcaaagacaggttctgggaaaacactggga
tatttgatcccagcattctttcaccttaggaaactacgtaacaaccctcagaatggccca
actgtgttggtcttggctccaacacgggagcttgccactcaaatccaggatgaagcaatt
aaatttggccgatcatctagagtctcttgcacgtgtttgtatggcggtgcttcaaaaggc
gcacaattgaaagagctagaccggggagcagatattgttgtggcaactcctggccgactc
aatgacatccttgaaatgaagaggattgactttaggcaggtctccctccttgttctggat
gaggctgatagaatgctggacatgggatttgagccgcaaattcgcaagattgtcaatgag
attccaccaagaaggcaaactcttatgtacacggcaacatggccaaaagaagttcgaaaa
atagcaagtgaccttcttgtgaatcctgttcaggttaatattggcagtgttgacgaactg
gctgcaaataagtccattacacagcatgttgaactagttcctgatatggacaaacagaga
cgcttggagcaaattcttagatcccaagaacctggctccaaaatcattatattctgttcc
actaaaaagttgtgtgaccatcttgctcgtagtcttgggcgtaattttggtgctgctgca
attcatggagacaaatctcaaggagaaagagattgggttttgaatcagttccggaatgga
cggtctccaattcttgttgccactgatgttgctgcgcgagggcttgatataagagatata
agggtagtgatcaattatgactttcctactggtgttgaagactatgttcatcgcattgga
cgaacggggagagctggtgctactggaatctcatttacattcttctcagagcaggactgg
aaacatgctcctgatcttgtcaaagttttggagggtgccaaccaagctgtacctcctgaa
ataagggacatagcattacgaggtgggcccgggtttggcaaggatcgtggcatgatgaat
cgttttgagcctgctgatggtggtggggggcgttgggattctggtggtcgtggtggccgt
ggcgggatgagagatggtgggtttggtggacgcggagggatgagggatggtggctttggt
ggatggggtggaatgagagatggtggatttggagggcgtggagggatgagagacagcggc
cttggagggcgtggagggatgagtatgagggatggaaattttggtggtcgtggtggtggg
agggatgacagctttggcagtgcttctggtcctcggggtggttgggacagaggtggtcgt
ggtggacacgatcgtctcaataactttgatggacgaggtcgtggtgctagagggcggggg
cgaggaagatttgatagcaacagaagagatggcaactcagacagaagtagaggtaggagt
ttcagccgcagtcctgatagagttcgaacatgggatgttagtcggagctcaagtagaagt
agaagcagaagcagaagccggggcaggagccggagttatagcagaagtcggggcaggagc
cggagttatagcagaagtcgtagcaggagcaggagctggtcacgtagccgtagtccaagg
agcagccgcagcccaagatacaaccgaagccggagtcaaagctatgagagatgcgagaga
aagccaaggaaatccaagtttgatcagatggaaccagatgctggaattggaacgctgcca
attgctcctgttgcatcgcagcaagttccagccgttgcagctggtgatctcagcctcccc
gctggggcaaccgtgccgagcaacccgcattcggagctgtag
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