Salvia splendens (scarlet sage): 121799844
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Entry
121799844 CDS
T07627
Name
(RefSeq) DNA repair protein RAD50-like isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03440
Homologous recombination
sspl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121799844
03450 Non-homologous end-joining
121799844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sspl03032
]
121799844
03400 DNA repair and recombination proteins [BR:
sspl03400
]
121799844
DNA replication proteins [BR:
sspl03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
121799844
DNA repair and recombination proteins [BR:
sspl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
121799844
BRCA1-C complex
121799844
NHEJ (non-homologous end-joining)
MRX complex
121799844
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_15
Rad50_zn_hook
AAA_21
SbcC_Walker_B
SMC_N
AAA_29
AAA
ABC_tran
AAA_13
AAA_27
AAA_16
Motif
Other DBs
NCBI-GeneID:
121799844
NCBI-ProteinID:
XP_042055281
LinkDB
All DBs
Position
4:37662723..37685857
Genome browser
AA seq
1319 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKNVITFFRPLTLIVGPNGAGKTTIIECLKVACTGELPPNAR
SGHSFVHDPKVAGETETKGQIKLRFKTAARKDVVCIRSFQLTQKATKMEYKAIESVLQTI
NPQTGEKVCLSYRCADMDREIPALMGVSKAVLENVIFVHQDEANWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQAQEIKTYKLKLDHLQTLKDAAFKLRESIAQYEAKTATLNS
QIEELDPKIQNIDREINKTELLLKDLRELQGQIATKSGERKSKFEDVHKRYSDLDEENED
TDEELNEWKSKFDERIAVLETKVNKLLREKMDNKETSRHLEDDIAKNIKEIAKLQALIEV
AQLSQKDKRDSTIRSLIRKHNLGSLPSGPLSDDVCSSLTDRIQSMLKDLHKDLQDKKKSN
KVALDVLFDKYMHANDRWKRIEAQKEAKVERKNNILNSIQEKENVRDSFEGRIAAVDMSV
IDERERNMQIEVERKSNQLAAKDFAERFKKMKLERFKLEQEIEALDHQRNTLESDSHDRV
VLSVKKADLENVRKKHRRTMNECKDRVTGVLKGRIPPDKDLKNEIVEVQSSLQKEYDDLE
KKVDEARNEVTMLKLKIQELNSNLSNFHHNLESRRRFVESKLQSLDPQAGGIDSYLKMLE
TAKERRDGLSRDYNIADGMGRMFDPFEKIASAHHYCPCCERPFSSNEEDAFIKKQRVKAL
DISERRKLLEVQSSNADFHLQQLDKLRVVYDEYVKTGKELIPLAEKNLHDLNEDLDLKHQ
ALDDVLGVLAQIKAEKDSVDALIQPVGTVDRLFQEMQALQKQVNELESKLDIQAQGQDAK
SLEEIISELKSLEKERNTLIDDTEKLRTEQMNMEKEISSLQSRWSIVREEKINVANILSN
IKRVEDELDRLLEDKSQVDLDLKHLEEDLAPLAREKEKLRDEHKKLEADLNCEYDLQAKN
HTETQLEVNSLLEMVSTIKKNESLNKGEELKALQAKQTVARSNITKCQIRMNEIEEEFEK
SKDLIRSQAELRRNIQQNLDYREAKAQLDELTREIESLEDSVLKIGGVSKFESLLLKNSQ
ERDSLLKELNSHRGTFSVYKSNIDQSKADLKQAQYRDIDKRYFDQLIQLKTTDMANKDLD
RYYKALDKALMRFHSMKMEEINKIIRELWQQTYRGQDIDYISIHSDSDGAGTRSYSYRVL
MQTGDAQLEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNSESLAA
ALLRIMEDRRGQENFQLIVITHDERFAQLIGQRQHAEKYYRISKDDYQHSIIESQEIFD
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccgttgacaaaatgttgataaagggcatccggagcttcgaccctgaaaacaaa
aacgttatcaccttcttcaggcccctcactctcattgtcggtcccaatggtgctggaaaa
acaactataattgagtgcctgaaagttgcctgtacgggtgaactacctccaaatgcccgg
tcaggtcacagcttcgttcatgacccaaaggtggcaggggagacagagacgaagggccag
ataaagctaaggtttaagacggcagcaaggaaggatgtggtctgcataaggtcatttcag
ctcacccagaaagccaccaagatggagtacaaggcaattgagtctgtgcttcagacgata
aatcctcagactggagagaaagtttgcctaagctaccgatgtgctgatatggacagagag
attccagctcttatgggtgtgtccaaggctgttcttgagaatgttatatttgtacaccag
gatgaggcaaactggccattgcaagatccatcaacactgaagaagaagtttgatgacata
ttttcagcaactcggtacacgaaggcattggaggttatcaaaaagcttcacaaggaccaa
gcacaggaaataaagacatataagctgaaattggatcatttacaaacactgaaagatgct
gcttttaagctacgggagagcattgcacaatatgaagcgaagacagcaacattaaattct
caaatcgaggagcttgaccccaaaatacagaatatcgacagggagattaataaaactgaa
ttgctgttgaaggacctgcgtgagttacaaggtcagatagctacaaagtcaggggaaaga
aaatccaagtttgaggatgttcacaagcgttatagtgaccttgatgaggaaaatgaagac
actgatgaagaactaaatgaatggaaatccaaattcgacgaaaggattgcagtgttggaa
accaaagttaataagttattgagggaaaagatggataataaggagacaagtcgacatctt
gaggatgacattgcaaaaaatatcaaggagattgccaagcttcaagcactcatagaagta
gctcaattgtcccagaaggataaaagagactccaccattcgaagcctaatcaggaagcac
aatttaggttcactaccaagtggcccattaagtgatgatgtttgttccagccttactgat
cgaatccagtcaatgttgaaggacctgcacaaagacttacaggataagaagaaatcaaac
aaagtagcgcttgatgtactgtttgataagtacatgcatgcaaatgatcgttggaaacga
attgaggctcagaaggaggctaaagtagaaaggaagaataatattttgaatagtattcaa
gagaaggagaatgtgcgtgattcatttgagggtcggattgctgctgttgatatgtctgtg
attgacgagagagaaaggaacatgcaaattgaggtggaaaggaaaagtaatcaactggct
gcaaaagattttgctgagcgttttaaaaaaatgaaacttgaaaggttcaagttggagcag
gaaattgaagctcttgaccaccaaaggaataccttggaatctgattcccatgacagagtt
gtactatctgttaagaaagcagatttggaaaacgttagaaagaaacatagaaggacaatg
aatgagtgcaaggacagagttacaggggtgctgaagggaaggattccacctgacaaggat
ttgaaaaatgagattgtggaggtccagagttctcttcaaaaagagtatgacgatttagag
aaaaaggttgatgaagctagaaacgaggtgactatgctgaagttgaaaatacaagaactc
aacagtaacttgtcaaatttccaccataatctggaatcaagacggagatttgttgaatcc
aaacttcagtccttggatccgcaggctggtggtatcgattcatatcttaaaatgttagag
actgccaaggaaaggagagatggactgagcagagactacaatattgctgatggcatgggg
agaatgtttgatccattcgaaaagattgctagtgctcatcactactgcccttgctgtgag
agacctttttcatccaatgaggaagatgcatttattaaaaagcaaagagtgaaagcactg
gatatttccgaacggcggaaattattggaagtgcagtcgtcaaatgctgattttcactta
cagcagttagacaaactccgggtggtctatgatgaatatgtcaaaactggcaaggagtta
attccgcttgctgaaaagaacctacatgacttaaatgaggatcttgatctaaagcatcag
gctcttgatgatgtgctgggtgtactggctcaaataaaggctgaaaaggattctgtagat
gcattgatacaacctgtaggaactgttgacaggctgttccaggaaatgcaagctttacag
aaacaggtaaatgaattggaaagcaaacttgatattcaagctcaaggtcaagatgccaaa
tccctagaagagatcatatcagagctgaaaagtttggaaaaagagaggaataccttgatt
gatgatacagagaagttaagaactgagcagatgaacatggaaaaagaaatatcatcacta
caatcacggtggagcattgtaagggaagagaagattaatgttgctaacatattatcaaac
attaaaagagtagaggatgagttagatcgtctgcttgaagataaaagtcaagttgatctt
gatttgaagcatttggaagaagatcttgctcccttggcaagggagaaagaaaaactacgg
gatgaacacaagaagttggaggccgatctaaattgtgaatatgacttacaggctaagaac
catacagaaacccaactggaagttaattcactgcttgaaatggtttctacaataaaaaag
aatgagagcttgaataaaggtgaggaattgaaagcactacaagcaaagcaaacagtagca
agatccaatattacaaaatgtcaaatcagaatgaatgagattgaggaggaatttgaaaag
agcaaagacttgattcgtagtcaggcagaattaagacgcaatatacagcagaatttagat
tacagagaagcaaaagcccagctggatgagctaactcgagagattgaatcacttgaagac
agtgtattgaagatcggtggtgtttcaaagtttgaatctctgcttctaaagaattcacaa
gaacgagatagtcttctgaaagagttaaatagtcatcgcggaaccttttctgtatacaag
agtaacattgatcagagtaaagctgatctcaagcaggcacaatacagagacattgataaa
cgctactttgatcaactaattcaactgaagacaactgatatggcaaataaggatctggac
agatactataaagcccttgacaaagccctcatgcgcttccactcaatgaaaatggaagag
ataaataagattattcgggaattatggcagcagacttacagaggccaggatattgattat
attagtattcattcagattctgatggtgctggtactcggtcctacagctacagggtgtta
atgcaaactggtgatgcacaactagaaatgagaggaagatgtagtgccggtcaaaaggta
cttgcttcacttatcataagattggcattagcggaaacattttgccttaattgcggaata
cttgcactggatgaaccaaccacaaacttggacggtccaaactctgagagtctcgctgca
gctttacttagaataatggaggatagaagaggccaagagaatttccagcttatcgtcatt
actcacgatgagaggtttgctcaacttatcggccaaaggcagcatgctgaaaagtactat
cgcatctctaaggatgactaccaacacagtataatcgagtcccaagaaatatttgattaa
DBGET
integrated database retrieval system
