Salvia splendens (scarlet sage): 121799922
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Entry
121799922 CDS
T07627
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-like
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121799922
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121799922
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121799922
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TPR_14
Succ_CoA_lig
DUF7674
Motif
Other DBs
NCBI-GeneID:
121799922
NCBI-ProteinID:
XP_042055374
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All DBs
Position
4:complement(38592605..38603622)
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AA seq
846 aa
AA seq
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MDPPSASVALNTRDGSPSAAVGEDDGALFAEGLAKEAAVLFQSGKFADCLKILNQLLQKK
ESDPKVCHNVSIVESLQDGCSDPRRLIKALEKIKEQSEELACASGEQEVSSNNGSEHTSS
IRGNNTPRHPISSVVYNDELDTSVATFNIAVILYHLHEYARSFSYLDALYQTIEPIDEGT
ALRICLLLLDVALLSHNASRSSDVISYMERIFFVSSPGNQADNGSSAHQPLLVSKSTSLP
NNLTLHDGSHPDSTSDDSLTRTLSEEALEDEPLPVLSSLDISGQNLQRPGIASANDLQRI
QPEGSISTADLRLKLHLYKVRFLLLTRNLKAAKREVKMAMNLARGKDYPLALYLKSQLEY
ARGNHRKAIKLLMASSNSIEMGISSMYYNDLGCIYYRLGKHHTSGVLFSKALSNSSAVRK
EKPPNLLTLSQDKSLLITYNCGIQSLACGRPFHAARCFQMASLIFYNRPLLWLRIAECCL
MALDKGLIKSSSASAISEIGVNVIGKGKWRQLALRYSPSNGNGVYVGMNSSVKGDGKQPD
LSISLAWQSLVNALFLLDSSEVFKADKAPVSEEKESGEAPLSQSSNLKNATGGDPKAPTA
ASGSSQANANGEAKEHKGGQNLAGTLANSILDYEHICMKENLMIRQAVLADLAFVELALG
DPLKALSTARSLLELPDCSKMYIFLGTIYAAEALCLLNRPNEAAEHLLMYMPDGNNVKLP
YSQEDCENWTVEKVSDTEESNGGTTAVVTPLSAADESLAPVFSSPEEARGLFCANFAANF
ALLGDFEQAQRFLTMAFSDIPNSPQAILTAIYVDIKRGNTHDALVKLRQHRRVRFVPGNL
TLNGSC
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atggatcccccctcagcgtcagtggcattgaatactagggacggatcgccgtccgcggcg
gtgggtgaggacgacggtgctctgttcgcggagggtcttgctaaggaggctgctgtgctt
tttcagagtggaaagttcgcggattgtttgaaaattttgaatcagctattgcagaagaag
gaaagtgatccgaaggtgtgtcataatgtttccattgtggagagcttacaagatggatgc
tcagatccaagaaggcttatcaaagcactcgaaaagatcaaggaacaaagtgaagaactt
gcttgtgcgtctggagaacaagaggtttccagcaacaatggaagcgaacacacttccagc
attagagggaataatactccccggcatcctatttcgtcagttgtgtacaatgatgaatta
gatacctcagtggcaactttcaacatagcagtcatcttgtaccatcttcatgaatatgca
agatcgttctcatatttggacgctttgtatcagaccattgaacctattgacgaggggaca
gctctccgtatctgccttttgctgcttgacgtcgcgttactttctcataatgcatcaaga
tcttccgatgtgataagctacatggaaaggattttctttgtcagtagtccaggcaatcaa
gcagataatggatcctcggcacaccaacctctattagtttcaaaatctacgtcacttccc
aacaatttgacccttcatgatggttctcaccctgattctacttcagatgattccttaacc
agaacattatcagaggaagcacttgaagatgaacctttgcctgtactatcctctcttgac
ataagtggacagaatcttcaaagacctggcattgcgtctgctaatgatctccaaagaatc
caaccagagggttcaatatcaactgctgatttaaggcttaagttacacctttacaaggtt
cgctttctgctcctgaccaggaacctgaaagcagccaagcgtgaggtgaagatggctatg
aatctggctcgtggcaaagattatcccctggctctctacctaaagtcacagcttgaatat
gctcgtggaaaccaccggaaagcaatcaagctgttgatggcatcaagtaacagcatcgag
atgggaatatctagcatgtactacaatgatctcggctgcatctactaccggctgggtaag
catcatacatcaggagtacttttttccaaagccttaagtaatagctcagctgtgcggaag
gagaagcctccaaatcttctaactttgtctcaggataaatccctcctgattacgtataat
tgtggcattcaatcattggcctgtggcagaccctttcatgcagctcgctgttttcaaatg
gcaagccttatcttctataacagacctcttctatggctaagaattgctgagtgctgtttg
atggccctagacaagggactgataaagtcttcctctgcatctgcgatttctgagattgga
gtcaatgtcattggcaaggggaaatggcgacagcttgctctaagatacagcccatccaat
ggcaatggagtatatgttggaatgaacagttcagttaaaggtgatggcaaacagcctgat
ctctcgatatctcttgcctggcagtctcttgtcaatgctttgttcttattagattcttca
gaagtattcaaggctgataaggctcctgtttctgaggaaaaagagtcgggagaggcacct
ttatcgcagagttccaatctcaagaatgccactggtggtgatcccaaagcacctactgcc
gcttctggctcaagtcaagctaatgccaatggtgaagcgaaagagcacaagggtggacaa
aatctggctggcacattggccaactccatccttgattacgaacatatttgcatgaaggag
aatctgatgataagacaagctgtgctggctgatttagcatttgtagagctggcactagga
gatcctttgaaagccctgtcaacagcaagatctctactagaacttcctgactgctcgaag
atgtacatattcttaggcactatatacgctgcagaggctttatgcctgttaaataggcca
aatgaagctgctgagcatttgctgatgtacatgcctgatggtaacaatgtcaagcttcca
tatagccaagaggactgtgagaactggacagtggaaaaagtgtctgacaccgaagagtca
aatggtggcacaacagccgttgttactcctctctcagcagcagatgaatccctagccccg
gtgttttccagccctgaggaagctcgggggctgttttgtgcaaattttgctgcaaatttt
gcgctgctgggagactttgagcaggctcaacgatttctaaccatggcgttttctgatata
ccaaatagtccccaagctattcttactgcgatttatgttgatataaagcggggtaatact
catgatgctcttgtcaagttgagacagcacagaagagtcagatttgttccagggaatctg
acgttgaatggaagctgttga
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