Salvia splendens (scarlet sage): 121800505
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Entry
121800505 CDS
T07627
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
sspl
Salvia splendens (scarlet sage)
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121800505
03036 Chromosome and associated proteins [BR:
sspl03036
]
121800505
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
121800505
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
121800505
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
121800505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
ResIII
UvrD-helicase
AAA_16
DEAD
Cep192_D4
AAA_22
SLFN-g3_helicase
ATPase_2
Motif
Other DBs
NCBI-GeneID:
121800505
NCBI-ProteinID:
XP_042056004
LinkDB
All DBs
Position
4:33600970..33605296
Genome browser
AA seq
917 aa
AA seq
DB search
MGTINDKSDDEYSYVGDKGDIGFIDFDNCQSVCSYNPAEESDIFNISVPFHLIEGRKPQS
GIVGETMSDSVTIRNTTNESLDLWSVKIFDSKPEDSFKISLMKPPTSDSDMEYIQDYVEL
DSLDERVLRPNQALTIWLSCKPKEIGVHSAAIHFSVGDEVIERLLFLLAEDKISKSLSSS
RPYQRPWRKKHDIFNPHAPDAAYVAARRPSQGRGRQFKFQLPKYSIPEEIRTMLSRGEIP
DPVNEGLTVENYGAFFKNLLAMEEIKLEEDMQSYYMEGVTMKSKRGGQMLSLEVPGLAEK
RPSLVTGDYIFAKLAFDDETSSTRYQGYIYRVEAENILLKFDQQFYRSHRDGNLYNVEFN
YNRTNMRRLYQAVEAAQSLERNFLFPSAMSRVTLRQYKALTPICSDLNEEQTLAVNTILV
RRGGPPYVIHGPPGTGKTKTLIEAIFQIYREDRHARILACAPSNSAADHILDRLINEERI
QIREHEIFRLNAYTRPFEDVNPNHISFCSHEESIFMCPPCELLEQYRIIICTYASASILY
SSGIQRGQFSYIFLDEAGQASEPEAMVPISHLYSRNTVLVLAGDPMQLGPVVFSTEAEVH
GLGTSYLERLFVCDLYRGGDTNFMTKLVRNYRTHEAILKLPSEMFYAGELIPCKDKNSPT
SWEGMIPDKEFPLLFIGIRGCDEREGSNPSWFNRIEASKTVEMIKVLIEEKGLKEEEIGV
IAPYRKQVSKIREALECLGNPNVKVGSVEQFQGQEREVIIISTVRSTVRHNEFDKVHYLG
FLSNPRRFNVAVTRAKSLIIIIGNPHIICKDPNWNKLLWYCVENNSYKGCFLPKQEEESE
LAEGEYQSFYGGNNQPSGSNWDDQGGGWQHSQGQWGEDVGWTPSDIPLGEEENNNIQPSD
VPWGEEENNNIQPSDVP
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atgggcacaattaatgacaaatcagatgatgaatactcatatgttggagataaaggggat
attggatttatagactttgataattgtcaatctgtttgtagctataaccctgctgaggag
agtgatatattcaacatttctgtcccgtttcatctaattgaaggaagaaaacctcaatca
ggaattgttggagaaacaatgtctgattcggttactataagaaacaccaccaatgagtcc
ttagatctctggtctgtgaagatttttgactccaaacctgaggattcgtttaagatttca
ttaatgaaacctcccacatctgattctgatatggaatacatccaagattatgtggaatta
gattcgttagatgagagagtgctcagaccaaatcaggctctgactatttggttatcctgc
aaaccaaaggaaataggcgtgcactcagcagctatacacttcagcgttggcgatgaggtg
atcgaacgtctccttttcctgctagcagaagataagatctccaagtctctgtcttcttca
agaccataccaaaggccttggagaaagaaacatgatattttcaatccccatgcacctgat
gccgcatatgttgcagcacgacgcccttctcagggtcgaggtcgccagttcaaatttcaa
ctgcccaagtattctattccagaagaaatccgcaccatgttaagcaggggtgagattccc
gacccagtcaatgaggggctaacagtagagaactatggtgcattcttcaagaatctatta
gctatggaggagataaagttggaggaagatatgcagtcgtattacatggagggtgtcacc
atgaagagtaagagaggggggcagatgttgtcacttgaggtcccgggattggctgagaaa
aggccttcacttgttactggcgactacatctttgccaagcttgctttcgatgatgaaact
tcaagcactcgatatcagggctacatttatcgagtggaagctgaaaatatactgttgaaa
tttgatcaacaattttaccgtagtcacagagatggtaacctctacaatgtagagttcaac
tataaccggacaaatatgcggcggttgtatcaagctgttgaagctgctcaatctttagaa
aggaactttctgttcccatctgcaatgtccagagtgacactgaggcaatacaaagcactc
actcctatatgttccgacctgaatgaggagcaaactttggctgttaacacgatccttgtc
cgtagagggggccctccttatgtcatccacggcccccctggtacgggtaaaacaaagact
cttattgaagctatctttcaaatttaccgtgaagatagacatgcccggattctggcctgt
gcaccttcaaatagtgcagctgaccatatattagacaggctgatcaatgaggaacgaatt
cagatccgggagcatgaaatctttcggcttaatgcatacacacgtccttttgaggatgtc
aaccccaatcacatcagtttttgcagtcacgaggaatcaatctttatgtgtcctccgtgc
gaactccttgagcagtacaggatcatcatatgtacgtatgcaagtgcctcaattctatat
tcatcaggcattcagagaggtcaattttcctacattttcttagacgaggctggccaagct
tctgagccagaagctatggttcctatatcacatctctactcaagaaataccgtcttggtt
cttgcgggagaccctatgcagctgggacctgtagttttctctacagaagctgaagtacat
ggacttggcacttcatatctggagagactttttgtgtgtgacctctatcgtggaggagat
actaattttatgacaaagttggtgagaaattatcggacacacgaggcaatactgaaactg
ccctcagaaatgttttatgctggggaactgatcccatgtaaagataaaaattccccaact
tcctgggaaggcatgattccagataaggagttccctttgctttttataggcattcgaggc
tgtgatgaaagagaaggaagtaatccatcttggtttaacaggattgaagcaagcaagact
gttgagatgattaaagttttgatagaagaaaaagggctcaaagaggaagagattggggtt
attgcaccttaccggaagcaggtaagcaaaataagagaagctcttgaatgtcttggcaat
ccgaatgttaaagttggaagtgtcgaacagttccagggacaagagagggaagtcattata
atatctactgtccgttcgactgttagacacaacgagtttgacaaggttcattatttggga
tttctgagcaacccaaggaggtttaatgttgctgttacccgagccaaatctttgatcata
attattgggaatcctcacataatttgcaaggatccaaactggaacaagctcttgtggtac
tgtgtggaaaataactcgtacaagggttgcttccttcctaaacaagaggaagagtccgaa
ctggccgagggagagtaccagagtttttacggtggaaataatcagccatctgggtcaaat
tgggatgatcaaggaggaggatggcagcattctcaaggtcaatggggcgaggatgttggt
tggacaccatcggatattcctttgggcgaagaagaaaataacaatatccagccatcagat
gttccttggggcgaagaagaaaataacaatatccagccatcagatgttccttag
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