Salvia splendens (scarlet sage): 121800888
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Entry
121800888 CDS
T07627
Name
(RefSeq) LOW QUALITY PROTEIN: transcription factor bHLH140-like
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
121800888
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sspl03400
]
121800888
Enzymes [BR:
sspl01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
121800888
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
121800888
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
121800888
DNA repair and recombination proteins [BR:
sspl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
121800888
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
121800888
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DcpS_C
zf-C2HE
AAA_33
Macro
HIT
AAA_18
tRNA_lig_kinase
AAA_22
AAA_17
AAA_5
ATP_bind_1
KTI12
AAA_16
Motif
Other DBs
NCBI-GeneID:
121800888
NCBI-ProteinID:
XP_042056314
LinkDB
All DBs
Position
4:complement(25987290..26006730)
Genome browser
AA seq
683 aa
AA seq
DB search
MESVEIDRGNTPPGGGKGEKLKQIILVLIGLPGSGKSTFCEEVAKISCRPWTRVCQDVIN
NGKSGTKIMCLSVAAAALEDGKSVLIDRCNIDKEQRADFLXLGGSETEKHAVVLDLPNSL
CISRSVKRSGHEGXLQGGRAAKVVNHMAPKKELPKLSEGFNRIMFCYNEKDVKEAIKLYG
SLSLCDSLPSGCFGQKSLDSKVQVGIRSFFKKQDTSGNANIPTLAFPSISTAGFQFDLEK
ASDIIVEKVEEYMVDLSHGSKILSLVKTKAAKKNIDSNKFSTFVGDITQLRSCGSLICNV
IANPTNREIKPGGGGVNAAVFKAAGFELEVATKERAEKLAAGECVVVPLPSSSPWFCAEG
VTHVIHVLGPNMNPKRPDCLKADYTKECKILREAYSSLFEGFVSIVKSYGNEDQNGKRTA
AFMPEKNKKSKGSSSPLSKSGVNNQNQAEQGSTTKTWNPWAQALHKIATSPGNHKDVVLE
VSDHVVVIKDSYPKAQQHLLVIAQCHGLDSLADVRGGDIPLLKEMHDVGLKWAEKLILEN
KSLEFRLGYHSIPSMRQLHLHVISQDFDSTHLKNKKHWLSFNTPFFLDSVNVIKQLEEAG
ELRLGNESFLDGVLRCHRCLSVNPNMPKFKNHLRSCKDPLTLLIQNGYLVSSEVIKMLTR
VKEDEDEDEDEDEGEGVSIPNDA
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggaatcagtggaaattgatcgaggaaatacaccgcctggaggaggaaagggggaaaaa
ctgaagcaaatcatactagtattaattggtctaccgggaagtggaaaatccaccttttgc
gaggaagtggcgaaaatttcttgtcgcccctggacccgcgtttgccaggatgtaatcaat
aatggcaagagtgggacaaaaatcatgtgtttatctgttgcagctgctgctttggaagat
ggtaagagtgtattgatagacaggtgtaacattgacaaagagcagagggcagactttctc
naactcggtggctcagaaacagagaaacatgccgtggtgcttgatcttccaaactcactc
tgtatctctcgttctgtgaagcgtagtgggcacgaggganagttacaaggtggtcgagca
gctaaagtggtgaatcacatggcgccaaagaaagagctccctaaactgagtgaagggttt
aacagaattatgttttgctacaatgagaaagatgtgaaagaagctatcaaattgtatggt
tctctcagcctgtgtgattctcttccttctggttgttttggtcagaagagtttggattcc
aaggttcaagttgggatcaggagctttttcaagaaacaagatacctccggaaatgctaac
attccaactttggcgtttccatccatttctactgcaggctttcaatttgatcttgaaaaa
gcatctgatattattgttgagaaagttgaggaatatatggtagatttatctcatggatcg
aaaatattgtccctcgttaagaccaaggctgcgaagaagaatattgactctaacaagttt
tctacatttgttggagatataactcaactccggtcttgtggaagtttaatctgcaacgta
attgctaaccctacaaaccgggaaataaaaccaggaggtggaggagtaaatgctgctgtt
tttaaagccgcaggcttcgagttagaagttgcaaccaaggaaagagctgaaaaacttgca
gcaggggagtgtgtggtcgtgccacttccttcatcttctccatggttttgtgcagaaggt
gtgacccatgttatccatgttcttggaccaaatatgaaccccaagcgacccgattgtctc
aaagccgattatactaaggaatgcaagattcttcgcgaagcttactcatcactgtttgaa
ggctttgtttctatagtgaagtcctatggtaacgaagatcaaaatggcaaaagaacagca
gcttttatgcctgagaaaaacaagaagagtaaaggttcaagctctccactatcaaaatct
ggtgtgaataatcaaaatcaggctgagcaaggcagcactactaagacttggaacccatgg
gcccaagctcttcacaagattgctacgagtcctggcaatcataaggacgttgtgcttgag
gtttcagatcacgtggtagtgataaaggattcttatccaaaggcacaacaacacctctta
gttattgcacaatgccatgggcttgacagccttgctgatgtccgtggtggagatattccg
ttattgaaagagatgcatgatgttggcttgaaatgggctgaaaagctcattctcgaaaat
aagtcgctggaattccgccttggataccattcaatcccctcaatgcggcaactgcaccta
cacgtgataagccaggacttcgactcgactcacctgaagaacaagaaacattggctttca
ttcaatactccattcttcctagattcagtgaatgtgattaagcaacttgaagaagctgga
gagctcagattgggaaatgaaagcttcttggatggggtattgcgctgccatcgttgtcta
agtgtgaacccgaacatgcctaagttcaagaaccatcttcggtcttgtaaagatcccctc
acattactaatccaaaatggctatcttgtttcctcggaagtaataaaaatgctgacaaga
gttaaagaagatgaagatgaagatgaagatgaagatgaaggtgaaggtgttagcatcccc
aacgatgcttga
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