Salvia splendens (scarlet sage): 121801543
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Entry
121801543 CDS
T07627
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl04120
Ubiquitin mediated proteolysis
sspl04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121801543
04120 Ubiquitin mediated proteolysis
121801543
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sspl04121
]
121801543
Enzymes [BR:
sspl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121801543
Ubiquitin system [BR:
sspl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121801543
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_16
zf-RING_11
zf-ANAPC11
zf-RING_5
FlxA
GTP-bdg_M
zf_RING_Vps8
zf-RING_Vps41
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
121801543
NCBI-ProteinID:
XP_042056983
LinkDB
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Position
4:complement(4935402..4939103)
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AA seq
518 aa
AA seq
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MMKLQTYAGFSVVAALAIIYHAFDSRGQFYPAMVYLSTSKISLVLLLNMGLVFMCILWQL
TKKIFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKSLHWLA
QKRVEYIETTPTVPKLSHVRIVSFMVFLLLIDGIFLYDSVDHLLETRQASVALFFSFEYI
ILATTTLSTFVKYVFHVSDMLLEGQWEKKAVCTFYLELIRDLLHLTLCMCFFLIIFLNYG
VPLHLIRELYETFRNFRIRVADYIRYRRVTSNMNDRFPDASPEELSVNDATCIICREEMT
AAKKLVCGHLFHVNCLRSWLERQNTCPTCRALVIPPEHGTSMSSTMINSLQQGTGTAGTS
TQGSSGDGVANDNVSQHQIRLQAAAAASSLYEKSFVYPSPNALMRSPGLASPSQVFQHSI
MARDGREGAASELTEQFSETTLNQFPNFNSGFRDGSSSESQLDLQRKLIEHQIEFLQNQL
QRLRTSNGEKMKDVGTSFDVKGKSVSSPSSSVIDSGET
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgatgaagctgcaaacttatgctgggttcagtgtggtagctgcattggctattatttac
catgcctttgatagtagaggccaattttatcctgcaatggtttacttgtcgacctcaaag
atcagtctagtgcttcttctgaatatgggattggtttttatgtgcatcctgtggcaattg
accaagaaaatcttccttggttcgctccgtgaagcagaggtcgagaggctgaatgagcag
tcatggcgggaggtcatggaaatattgtttgcaataactatttttagacaagatttttca
gttacatttcttgcaatggttactgccttgcttctgattaaatcattgcattggttggcc
caaaagagggtggaatacatagaaacaactccaacagttccaaagctatctcatgttcgc
attgtatctttcatggtgttcctactccttattgatggcatctttctgtatgactcagtt
gatcatttattagaaaccagacaagcttcagtcgcactgttcttttcatttgaatacata
atactggctacaacaaccctctcaaccttcgtgaagtatgtgttccatgtcagtgacatg
cttttggaaggacaatgggaaaagaaggctgtctgcacattttacttggagcttatccga
gacttgctgcacttgactctatgcatgtgtttcttcctcatcatctttttgaactatggt
gtgcctcttcacttgatccgcgagctgtacgagacattccgcaactttagaatccgtgtg
gctgattatatacgttaccggagggtcacttcgaatatgaatgatcgtttccctgacgca
agccctgaagaactcagtgtaaatgacgcaacctgcattatatgtcgagaggagatgact
gcagccaaaaaacttgtatgtggacatcttttccatgtgaactgcctcagatcatggttg
gaaagacaaaacacatgccctacatgcagggctcttgttataccacctgagcacgggaca
tctatgagttcaacaatgataaatagcctgcagcaaggaactggtacggctggtacttct
acacaaggatcaagtggtgatggtgtggcaaatgataatgtcagtcaacatcagattaga
ctccaagcagcagccgctgcgtcctccttatatgaaaaatcttttgtttacccttctcca
aatgctctaatgcgatcacctggattggcctcaccttcgcaagtatttcaacattcaata
atggcaagagatggtagagagggtgctgctagtgaactgactgaacagttttccgaaaca
accttaaatcagttcccaaatttcaactcgggatttagagatgggagttcatcagagtct
caacttgatttgcaaaggaagctaatcgagcaccagattgagtttctgcaaaaccagctc
cagcggctaagaacttcaaatggggagaaaatgaaggatgtggggacttcatttgatgtc
aaagggaaatcggtatcatcaccatcttcgtctgtgatcgactctggtgagacctaa
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