Salvia splendens (scarlet sage): 121801892
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Entry
121801892 CDS
T07627
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121801892
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspl03021
]
121801892
03036 Chromosome and associated proteins [BR:
sspl03036
]
121801892
Transcription machinery [BR:
sspl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
121801892
Coactivators
SAGA/TFTC/STAGA complex
121801892
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
121801892
STAGA complex
121801892
TFTC complex
121801892
SAGA complex
121801892
SLIK complex
121801892
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_WDR75_1st
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
Cytochrom_D1
Beta-prop_HPS5
Beta-prop_IP5PC_F
Beta-prop_NWD2_C
PALB2_WD40
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
121801892
NCBI-ProteinID:
XP_042057282
LinkDB
All DBs
Position
5:complement(10715265..10721923)
Genome browser
AA seq
670 aa
AA seq
DB search
MDQEEIDKVVLAYLDKRGFKQAGLALQQEKQQNSKGSNASSNAQIDPDIAKQILSLSEVD
GPAQYQEGYSKLRSWAYSSLDQYQHELVRVLYPVFIHAFMDLVAKGHIQEARSFFNSFRG
DHEVMHTRDLQKLEGVLSPSHLEEMEFAHSLRQSKVGIKICQYSYDLLLQYLHKSQSITM
LGIVNEHINFQVSPGQPNSIADDAEYVTFFGSEQDAANLINQKEIHWGLLEDSLEERLEK
MGAPNMDSDKADGEVREGELEENKKRSDGGKQGTTPKKLKKDKVVVGATAKAHRSDSVAA
SGAPRVKPELALPEIPVEVEQSILEDLRNRVQLSSMALPSVSLYTFINTHDSLNCASISH
DGSLVAGGFSDSSLKVWDMAKLGKQNVTSPLQGDNDLATNETSSSAGGRNYTLFRGHAGP
VHSATFSPFGDFILSSSSDSTIRLWSSKLNANLVCYKGHNYPVWDVQFSPLGHYFASASH
DRTARIWSMDRVHPLRIMAGHLSDVDCVQWHANCNYLATGSSDKTVRLWDVQSGECVRIF
IGHRSMILSLAMSPDGRYMASGDEDGAIMMWDLASGRCVAPLVGHGSCIWSLAFSCEGSL
LASGSADCTVKIWDVATSSRVPKSDENGKNGNVSRLRSLKTLPTKSTPVYALQFSRRNLL
FAAGTLSKQS
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggatcaagaagagatcgataaagtggtactcgcgtacttggacaagaggggtttcaag
caagcgggcctcgctcttcagcaagagaagcagcaaaacagtaaaggcagcaacgcctcc
tccaatgcacagattgatcctgatattgcgaaacaaattctctctctctccgaagtggat
ggtcccgctcagtaccaggaaggttatagcaagctacggtcttgggcttatagttctctg
gatcagtaccagcacgagttggttagagtcttgtatccagtatttatccatgcattcatg
gatcttgttgcaaagggtcatatccaagaagcccggtctttttttaatagctttcgagga
gaccatgaagtcatgcatacacgtgaccttcaaaagttagaaggtgttctttctccctca
catctggaggaaatggaatttgcacattctctaagacagagcaaagttggcatcaagatc
tgccaatattcctatgatctacttctacaatacttgcacaaatctcaatcaattacaatg
cttggaattgtcaatgaacacatcaactttcaagtttctcctgggcaaccgaactccatt
gctgatgatgctgaatacgtcacgttttttggaagtgaacaggacgctgctaatttaatt
aaccagaaagaaattcactgggggttgcttgaagattctttggaagaaaggttggaaaag
atgggggcgccaaatatggattccgacaaagcagatggagaagtaagagaaggtgaactg
gaagaaaataagaaaaggtctgatggtggcaagcaaggcactacacccaaaaagttgaaa
aaggataaggttgttgttggtgccacagcaaaagctcatcgttcagatagtgttgctgcg
tctggagcaccgcgtgtaaaacctgagctcgcattgccagaaataccagtagaggtggaa
cagtctatccttgaagatttgagaaaccgtgtgcagctgagtagcatggcattgccttct
gttagcttatatactttcatcaacactcatgacagcttgaattgtgcttcaatatctcat
gatgggtcattggtagctggtggattttcagactcatcattgaaggtttgggacatggca
aagctcgggaaacagaatgtaacctctcctttgcagggtgacaatgatttggctaccaat
gagacaagctcaagtgctgggggaagaaattacacattatttcgagggcacgctggacct
gtgcattctgccacttttagtccgtttggggatttcattctgtcttcttcatcagattct
acaattcgactatggagctcaaaactgaatgcaaatcttgtctgctacaagggtcataat
taccctgtatgggatgtacagtttagtccacttggccactattttgctagtgcttcacat
gatcgcacagcaaggatctggtcaatggacagagtacatcctctaaggatcatggcaggt
catttatctgatgtggattgtgtgcaatggcatgcaaattgcaactatcttgctactgga
tctagtgataaaacagtgcgcctatgggatgtacagagtggcgaatgtgttagaatattc
attggtcacagaagtatgatcttaagtttggcaatgtcacctgatggtcgctatatggca
tctggtgacgaagatggtgcgataatgatgtgggatctcgcatctggtcgctgcgttgcc
ccattagtcggccatggctcttgcatttggtcactggctttcagctgtgaaggttcgctt
ctagcttctggttctgctgattgcacggtgaaaatatgggatgtagctacaagctcaaga
gtgccaaaatcagatgagaatggcaaaaatggaaacgtaagcagactgagatctctgaaa
actttgcccaccaaatctactcccgtttatgctctgcagttctccagaagaaacctttta
tttgctgccggcactctctcaaagcagtcgtag
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