Salvia splendens (scarlet sage): 121802584
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Entry
121802584 CDS
T07627
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121802584
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121802584
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121802584
Spliceosome [BR:
sspl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
121802584
Complex C
U4/U6.U5 tri-SnRNP related factors
121802584
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
T2SSE
AAA_16
nSTAND3
AAA_30
Motif
Other DBs
NCBI-GeneID:
121802584
NCBI-ProteinID:
XP_042058202
LinkDB
All DBs
Position
5:complement(9211778..9214641)
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AA seq
843 aa
AA seq
DB search
MLEGRRISYEDDGAPTDCPPKAGETRTRRRTLMMGIRETHSKSEQQTQPDEKSPEKQQID
VETLRKRSRQEYLMMREKKKLEQLINDVEDQEYLFQGVDLTSEQRLKRQICDLVGKKIDC
SKEYRIPESYDGNRRKGFDAALQRYTDPDPDPAWEEHQFGKAIMKHQKKNCDYEFVFEHQ
IDSVKTELIDSGDRIEEESPLPELENEKKNLPIYAYKEQLMKAVDDHQVLVIVGETGSGK
TIQIPQFLDEAGYTRRGMIGCTQPRRVAAMSVAARVAREKGVKLGNEVGYSIRFEDRTSQ
KTVLKYMTDGRLLHEFRQQLRKEPILASYSVIMVDEAHERTVNTDILFSLLKDVTRARPD
FKLIISSATLDAIKFSDYFDSAPIFTIPGRKFPVEILYTRAPEPDYLAAAVATALQIHAT
EEAGDGDILVFLTGQEEIEAAEVIVSEKIRKVGTKMAELIICPIYANLPSEVQARVFDPT
PKGARKLVLATNIAETSLTIDGIKYVVDCGFAKMKSYSPRVGMESLVVEPITRASANQRA
GRSGRTGPGKCFRLYTAYTFANELDENIVPEIQRTNLGNVVLTLKSLGVDDLLHFDFMDP
PPAEALVKALELLYALGALNKRGELTRVGEVMSEFPLDPMLSKMIVASEKYGCCDEIISI
SCMLSVGNSIFCRPKGKEILADNARRSFHMGDVGDHIALLNVYNFWKDNNFSSQWCYENY
VQGRSMRRARDIRDQLERLVARAGIPLLSNVNDLDAIKKAIASGFFPHSARLQKHGDGYV
TVKHKQNACIHPSSGLAEVCPRWVMYHELVLTTKEFMRQVTQLKPEWLLEVAPHYYKVEE
VGI
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagggaagaagaatttcgtacgaagatgacggcgcccccaccgactgcccgcct
aaagcaggggaaactcgaactaggagaaggacgttgatgatgggaatacgcgaaactcat
tctaaatcagaacaacaaacgcagccggatgagaaatcaccggagaagcaacaaatcgac
gttgagacactgaggaagcggtcgaggcaggagtatttgatgatgagagagaagaagaaa
ctggaacaactgataaatgatgtagaagaccaggaatacttgttccaaggcgtcgatctc
actagcgagcagagattgaagagacagatctgcgatctcgttggaaagaaaatcgattgc
tccaaagaatataggattcctgaatcttatgatggaaatcggcgaaagggattcgatgca
gcattgcagcgttacaccgatccagatcctgatccagcttgggaggagcaccaattcgga
aaagcaattatgaaacatcagaagaagaattgcgattacgagtttgtgtttgaacatcag
atcgactctgttaagacggaattgatcgatagcggtgatagaattgaggaagaatcgcca
ttgccagagctggaaaacgagaagaagaatttgcctatctacgcctacaaggaacagttg
atgaaggcggtggacgatcaccaggtgcttgtgatagtaggtgagaccggctccgggaag
acgattcagataccgcaatttctcgacgaggcggggtacacgcgacgaggaatgatcgga
tgcacgcagccacggcgcgtggcggccatgagcgtcgccgctcgagttgctcgagagaag
ggggtgaagctagggaacgaagtcggctactcgattcgatttgaagaccgcacatcgcag
aagacggttctgaaatacatgacggatggaaggttactccacgaattccgtcaacagctt
cgcaaagagccgattctcgcgagctacagtgtgataatggtggatgaggcacatgaacga
acagtcaatacagacattctcttcagtttgctcaaggatgttactcgagctcgtcccgat
ttcaaattgatcatctccagcgcaactcttgatgcaatcaagttcagtgattacttcgat
tcagccccaattttcacaattcccggaaggaaatttccggttgaaatactttacactagg
gcaccggagccagattacttggctgctgctgttgctactgctcttcaaattcatgccacg
gaggaggccggagacggagacatccttgttttcttgacagggcaggaggagattgaggcg
gcggaggtaattgttagtgaaaagattagaaaggtgggaacaaaaatggctgaactcata
atttgcccaatttatgcaaacttgccttcagaggtgcaggctagagtgtttgatcctact
ccaaagggggcaaggaagcttgttcttgcaactaacatagctgaaacatctttaacaata
gatgggatcaaatatgttgtggattgtggctttgccaagatgaagtcatacagtcctcgg
gtgggaatggagtcgttggtggtggagcctatcacgagagcatcggcgaatcaacgggct
gggagatctggtagaacgggtccaggtaaatgcttccggttgtatactgcttatactttt
gctaatgaattggatgaaaacatcgtgcctgaaatacagaggactaatttggggaacgtg
gtgctgactctcaagagcctcggtgttgatgatctgctgcatttcgacttcatggaccct
ccaccggctgaagctttggttaaggcgttggagcttctttatgctcttggagctctcaac
aagagaggtgagttgacaagagttggagaggttatgtctgaattcccgcttgatccaatg
ttatctaagatgattgttgcttctgagaaatatggttgttgtgatgagatcatatcgatt
tcttgcatgctatctgttgggaattcgatcttttgcaggcctaaggggaaggaaattcta
gcagacaacgcgcgtaggagtttccacatgggagacgtgggagatcacattgcattgctc
aatgtatacaatttttggaaggacaacaatttctcatctcaatggtgctatgaaaattat
gtgcaggggaggagcatgaggcgggctagggatatacgtgatcagctggagaggctggtg
gcacgggctggcatcccgctgctgtcaaatgtgaatgatttggacgcgatcaagaaggcc
atagcatcggggttcttcccccactctgctaggttgcagaagcacggggacgggtatgtg
actgtgaaacataagcagaatgcgtgtatccacccgagttctggtctagcagaggtgtgt
ccgagatgggtgatgtaccatgaattggtgttgacgacgaaggagttcatgaggcaggtg
actcaactcaaaccagaatggctgcttgaggtcgctcctcattattacaaagtggaagag
gtcgggatctga
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