Salvia splendens (scarlet sage): 121803557
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Entry
121803557 CDS
T07627
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121803557
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sspl03400
]
121803557
DNA repair and recombination proteins [BR:
sspl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
121803557
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Helicase_C_2
AAA_12
Motif
Other DBs
NCBI-GeneID:
121803557
NCBI-ProteinID:
XP_042059118
LinkDB
All DBs
Position
5:complement(5716984..5725136)
Genome browser
AA seq
1812 aa
AA seq
DB search
MASFSSSGEFSSSDSHRRCIPPTFKSMGDDSISSRSSSSSDLESKEIYGGMERNRAAAPQ
LRKRTCEEAKEAFFRGISGRTRSNRDACIGVNPLSSASTTKRKRQEMPTPSVGGQTKTPG
FSWKKPFASVEISHEDVSHRRVRVEEGDVALIDKAEFISRKSFSLTKIRSSGKGSLKGGS
SSHKPISIILLESDSDEDMMAEDIEIHTFDETEVGSAARLNKNVGGASARKDAVSAHHSM
TFTPRDYFTGFDTLADDSTTLADKANNNVGKSFREITSKRNIEGLLKKSKSPYLQADRSG
SSAQKVNRDEYRNYEKVGIERISESDFKKRKILSKNGSSNSKQQDEGIATTSAKNVRRVS
EKIPSFVKNDGNKRKDFDSSLKRRGDAWNHNVVDADDVDKSSYEFLCSSSSSESSSDDVK
KREDSDSSLKRRVEACNHNVDDDDDYVDKSSDEFLCSESGSDDVSTSTQDSEDSSYDPEL
EMGVGRKTGRSKKASSPPTNSDSGSSLDADVEVGSSHSEVEWLNPPHDACNVLEESEELD
ELFYYKSDAEEGLNETCSKQPNNEKGQSQEWTTGPKEVAPTTDSKYGSDHCDDDGDDEEE
KERTEAISSDFPARAKATKESLAVETKVPSGPKEAALPSHLRDGCDHCRGAKERTEDSHA
RAKKKTPDMAMEKKVPSGPKEAAILSHLRDGCDHSHDGAKERTEDSHVRAKKKTPGMARE
TKVPSGPTEAALPSHLRDGYDHSHDGAKERTEDSHVRAKKKTPGMARETKVPSGPTEAAL
PSHLRDGHDHSHDGAKERTEDSHVRAKKKTPGMARETKVPSGPTEAALPSHLRDGYDHSH
DGAKERTEDSHVRAKKKTPGMARETKVPSGPTEAALPSHLRDGYDHSHDGTKERTEDSHV
RAKKKTPGMARETKVPSGPKEAALPSHLRDGYDHSHDGAKERIKDSHVPAKKKEATPSSQ
SKDDHDHSHDETKKRTEAGQASDSHMRAGIASEKKVRYRPTKAATPSHSEDVCDHTDGEK
TETGSRDNSWTDAVPMASETEVPREGKKSYPKGVKELCSMLANAVLGNGQFPTDKEIYEE
AKQGLAPPTPYTLPLKFRFEDEVPKPVEKTDYEKEIDNLFYDLDCCWALDEVQPLDYPKD
NLENENPPHEETQHKRCSKGEHDLVLEDDEGLVCKFCRFQALGPKDIMPEWVERPYRDSE
RKQRHETEDLFEFDDLHISTNDADAAGSSRNATGTVWNIKPGVRDSMYEHQREGFEFLWK
NLAGSIDLDELKSTKPAGVGGCIISHAPGTGKTRLTMVFIETYFKLFPGCRPVIISPAST
LLNWEEEFEKWNVEFPFHNLSNTEFSGKESKALVERISQKKRNNTTTRMIKILSWSMVGG
ILGISYTLFGKLAGEATENKLLRRILLEAPGLVVLDEGHTPRNSRSNIWNALLKLKTEKR
IILSGTPFQNNFSELFNTLRIVRPAVADVLAQEKMFAEAAVPKRTSWSSRNKNKREHAQS
SLISERALQHLKGCMLPFVNLHTGTILKQSLPGLRDCVILLKPPALQKSVIETIEDSSNF
KYEHEVSMLSVHPYLLMKCVTTESRKTGIDMAAVEASELNPQEGVKTKFLMELIRLCMAV
NEKVLVFSQYLQPLMLIKEQLKEVFKWAEDKEILTMQGKQTQKERQILINLFNNSENGSK
IMLASTKCCAEGISLVGASRVVLLDVVWNPSVERQAICRAYRIGQKKFVHTYHLMTSGTK
EDDKYCRQAEKERLSELVFSSSKTNQQKQASLAIEDRILEAMVAHEGLKDMFEKIINQPK
ETNLIETFGLTN
NT seq
5439 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtttcagtagctccggcgaattctccagttccgacagtcatcgccgctgcatt
ccgcccacattcaaaagcatgggtgatgatagcattagcagcagatcttcttcttcttct
gatttagaatccaaagaaatttatggtggaatggagagaaatagagctgctgctcctcaa
cttcggaaaaggacttgtgaagaagctaaggaggcattcttccgtggtatttctgggcga
acgagatccaacagagatgcgtgcataggggtgaatcctttgagctctgctagtacaaca
aagaggaagagacaagagatgccaactccaagtgttggagggcaaacaaaaacaccaggc
ttttcttggaaaaaaccatttgcatctgtggaaatatcccatgaggatgtcagccatcga
agagttcgtgttgaagaaggagatgttgcgcttatcgataaagctgaattcattagtcgg
aaatcattttcattgacaaagataaggtcctccggcaagggaagtttgaagggaggttct
tcgtcacacaaaccgatctccattatcctactagagagtgacagcgatgaagatatgatg
gctgaggatattgagatccatacatttgatgaaaccgaagtcggttctgctgctcgttta
aacaaaaatgttgggggggccagtgcaagaaaagacgcagtttctgctcatcattctatg
actttcactcctagagactatttcactggttttgacacattagcagatgactcgactaca
ttggcggataaagccaacaacaatgtaggtaagagtttcagggagattacaagtaagaga
aatatcgaaggtctgcttaagaaaagcaaatctccatatttacaagctgacaggagtgga
tcatctgcacaaaaggtgaacagagatgaatataggaattatgaaaaggttggaattgag
agaatcagtgaatcagattttaaaaagaggaaaatactttcaaagaatggatcctcaaac
agtaagcaacaagacgaaggtattgctaccacttctgcaaagaatgtcagaagagtgagt
gaaaagataccatcatttgtcaagaatgatggaaacaagagaaaagattttgactcttca
ttgaagcgaagaggtgatgcatggaatcataatgttgttgatgctgacgatgtggataaa
agctcgtatgaatttctttgctcatcctcaagctctgagtccagcagtgatgatgtaaaa
aagagagaagattctgactcgtcattgaagagaagagttgaagcatgtaatcataatgtt
gatgatgatgatgattatgtggataaaagctcagatgaatttctttgctctgagtccggc
agtgatgatgttagtacatctacacaagactctgaagacagctcatatgatccagagctg
gagatgggtgttggtcgaaagacggggagaagcaagaaggcatcttcaccacctactaat
agtgattctggcagttctcttgatgcagatgttgaagtggggagctctcatagcgaagta
gagtggttgaacccgcctcatgatgcatgcaacgtcctagaagaaagtgaagaattggat
gaacttttttattacaaatctgatgcagaagagggattgaacgagacatgctctaagcaa
ccgaacaatgaaaagggccaatcacaggaatggacaacggggccaaaagaggtggctcct
accaccgactcaaaatatggctctgatcattgtgatgatgatggtgatgatgaggaggag
aaggaaagaactgaagcaatcagttcagattttcctgcccgtgctaaggctacaaaagag
agcttggctgtggaaacgaaagtgccatctggaccaaaggaggcagctcttccctcacac
ttaagagatggctgtgatcattgtcgtggtgctaaggaaagaacagaagactcacatgct
cgggctaagaaaaagaccccggacatggctatggaaaagaaagtgccatctggaccaaag
gaggcagctattctctcacacctaagagatggctgtgatcatagtcatgatggtgctaag
gaaagaactgaagactcacatgttagggctaagaaaaagaccccgggcatggctagggaa
acgaaagtgccatctgggccaacggaggcagctcttccctcacacttaagagatggctat
gatcatagtcatgatggtgctaaggaaagaactgaagactcacatgttcgggctaagaaa
aagaccccgggcatggctagggaaacgaaagtgccatctgggccaacggaggcagctctt
ccctcacacttaagagatggccatgatcatagtcatgatggtgctaaggaaagaactgaa
gactcacatgttcgggctaagaaaaagaccccgggcatggctagggaaacgaaagtgcca
tctgggccaacggaggcagctcttccctcacacttaagagatggctatgatcatagtcat
gatggtgctaaggaaagaactgaagactcacatgttcgggctaagaaaaagaccccgggc
atggctagggaaacgaaagtgccatctgggccaacggaggcagctcttccctcacactta
agagatggctatgatcatagtcatgatggtactaaggaaagaactgaagactcacatgtt
cgggctaagaaaaagaccccgggcatggctagggaaacgaaagtgccatctggaccaaag
gaggcagctcttccctcacacttgagagatggctatgatcatagtcatgatggtgctaag
gaaagaatcaaagactcacatgttccggctaagaaaaaggaggctactcctagttcccag
tcaaaagacgaccatgatcatagtcatgatgagactaagaaaagaaccgaagcaggacag
gcttctgattcacatatgcgtgctggcatagctagtgaaaagaaggtccgctacagacca
acgaaggcagctaccccctcccactcagaagatgtctgtgatcatactgatggggaaaaa
actgaaacaggttcacgtgataattcttggactgatgccgtacccatggctagtgaaact
gaggtgccgagggaaggaaagaaatcatatccaaaaggagtcaaggagttatgcagcatg
cttgcaaatgctgtattgggaaatggacaatttcctacggacaaggaaatatatgaagaa
gctaagcagggacttgcacctccaactccatatactcttccactgaagttcagatttgaa
gatgaggtacccaaaccggtggagaaaacggattatgagaaggagattgacaacttattt
tacgatctagactgttgttgggctttggatgaagtgcaaccccttgactaccccaaggat
aacttagaaaatgaaaatcctcctcatgaagaaactcaacacaaaagatgttctaaaggg
gaacatgacttggtcctagaagatgatgaaggactagtatgtaaattttgccgttttcaa
gcccttggaccgaaggatattatgcctgaatgggtggaaagaccttacagggactcggaa
agaaaacaaaggcatgaaacagaagatctctttgagtttgatgatcttcatatatcaacc
aatgatgctgatgctgctggaagcagtagaaatgctactggtacagtatggaacatcaaa
ccaggtgtaagagatagtatgtatgagcaccagcgtgaaggctttgagtttctgtggaaa
aacctggcaggaagcatcgatcttgatgaactgaagagcaccaagccagctggagtgggt
ggatgcatcatttcccatgctccggggactgggaagacgcgtttgactatggtcttcatc
gagacatacttcaaactgttcccaggctgcaggccagtgatcattagcccagccagcact
ctcctcaactgggaagaagagttcgagaaatggaatgttgagttccccttccataacttg
agcaatactgaattctctggtaaggagagcaaggctcttgttgaacgtatatctcaaaaa
aaaaggaataatactactacgcgtatgatcaagatattgagctggagcatggtagggggc
attctaggaatcagctacaccttgtttgggaagctagccggagaggcaacagagaacaag
ttattacggagaatactgttggaggcacctggattggttgttcttgatgaagggcacact
cctcgaaattctaggagtaacatttggaatgctctcctcaagcttaaaactgagaagagg
atcattctttctggaactcctttccagaacaattttagcgaactcttcaacacactccgt
atagtaaggccagcagttgcagatgtgttagcacaagaaaagatgtttgctgaagcggct
gtgccaaagagaacgtcttggagcagtagaaacaaaaataagagggagcatgcacagtct
tctttgatttcagaacgtgctttgcagcatctaaaaggttgcatgttgcccttcgttaat
ctacacacaggcaccatcctcaagcagagcctgcccggtttgagagactgtgttatcctt
ctcaaacccccagcactgcagaagagtgtgattgagacaatagaggactccagcaacttc
aagtatgaacatgaggttagtatgctatccgtgcacccatatctgttgatgaaatgtgta
acaacagaaagtagaaagactgggattgacatggctgcagttgaggcttccgagcttaat
ccccaagaaggcgtcaagaccaagtttctcatggagctaattcgcctctgtatggctgtg
aacgagaaagtactcgtattcagccagtatcttcaacctcttatgcttataaaggagcag
ttgaaagaagtgttcaaatgggctgaagacaaggagattcttactatgcaagggaagcaa
acacaaaaagagcggcagatcttgattaatctgttcaataattcggaaaatggatccaag
atcatgcttgcatcgaccaagtgctgtgcagaggggataagcttggttggggcctcaagg
gtggtattgttggatgtagtctggaacccctcggttgaaaggcaggcgatatgccgtgct
tataggatcgggcagaagaagttcgtccacacctaccatcttatgacttccggaacaaaa
gaggatgacaaatactgcaggcaagctgagaaggagcgtttatctgagctggtcttctca
tcttcaaaaaccaaccaacagaaacaggcatctttagctattgaggacaggattctagag
gctatggttgctcatgaaggtcttaaagatatgtttgaaaagatcatcaaccagcccaaa
gagaccaacctaattgaaacatttggtctcacaaattga
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