Salvia splendens (scarlet sage): 121803558
Help
Entry
121803558 CDS
T07627
Name
(RefSeq) coatomer subunit alpha-1-like
KO
K05236
coatomer subunit alpha
Organism
sspl
Salvia splendens (scarlet sage)
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sspl04131
]
121803558
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sspl04147
]
121803558
Membrane trafficking [BR:
sspl04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
121803558
Exosome [BR:
sspl04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
121803558
Exosomal proteins of bladder cancer cells
121803558
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_1st
EIF3I
Beta-prop_TEP1_2nd
WD40_Gbeta
TPR_COPA_B
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_DCAF4
Beta-prop_WDR41
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_SPT8
Beta-prop_Aladin
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Fis1_TPR_C
Motif
Other DBs
NCBI-GeneID:
121803558
NCBI-ProteinID:
XP_042059119
LinkDB
All DBs
Position
5:complement(382477..388240)
Genome browser
AA seq
1218 aa
AA seq
DB search
MLTKFETKSNRVKGLSFHTKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH
KSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW
NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR
LSQMNADFFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKIWRMNDTKAWE
VDTLRGHMNNVSCVLFHARQDIIVSNSEDKSIRVWDATKRTGLQTFRREHDRFWILSAHP
EMNLLAAGHDSGMIVFKLERERPAFSVSGDSVFYVKDRFLRTFEYSTQKDTQLIPIRRPG
SNSLNQAPRTLSYSPTENAILVCSDVDGGSYELYVIPKDSYSRGDTAQEAKRGAGGSAVF
VARNRFAVLEKSSNQVLVKNLKNEVVKKSVLPVAIDAIFYAGTGNLLCRAEDKVVIFDLQ
QRIVLGDLQASFVRYVVWSQDMESVALLSKHSIVIADKKLVHRCTLHETIRVKSGSWDDN
GVFIYTTLTHIKYCLPNGDSGIIKTLDVPVYVTKIYGNTIFCLDRDGKNGPIIIDSTEYI
FKLSLLKKRYDHVMSMIKNSELCGQAMIAYLQQKGFPQVALYFVKDERTRFNLALESGNI
EKALESAKKIDEKDYWYRLGVEALRQGNAGIVEYAYQKTKNFERLSFHYLITGNLDKLSK
MMKIAEVKNEVMGQFHNALYLGDVQERVKILENAGHLPLAYITAFIHGLHDVVERLSAQL
GDNVPSLPEGRQASLLIPPSPVLCAGDWPLLMVSKGIFEGSLDDAGKGAEEDYEEAADAD
WGEGLDIGDVDHLQNGDISMVLEEEDVHNENDEEGGWDLEDLDLPPDADTPKVASNAQSS
VFVCPTPGMPVSQIWVQKSSLAAEHAAAGNFDTALRLLSRQLGICNFAPLKSQFIDLHLG
SHSYLRACTSAPVISVAVERGWSESASPNVRGPPALIFDFSQLDEKLKAGYKATTTGKFS
EALRHFLSILHTIPLVVIETRREVDEVKELVIVVKEYILGLQMELKRRELKDDPVRQQEL
AAYFTHCKLQPPHLRLALASAMTVCFKAKNLSTAANFARRLLESNPANENQARQARQVLQ
AAERNMTDATQLNYDFRNPFVICGATYVPIYRGQRDVTCPYCTTHFVPSQQGQLCTVCDL
AAVGADASGLFCSPSQMR
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgctgacgaaattcgagaccaagagcaatcgagtgaaaggattgagctttcacaccaag
cgcccatggatcctcgcaagtctccacagcggcgtcatccagctctgggattaccgcatg
ggcaccctcatcgaccgattcgacgagcacgatggacccgtccgcggcgttcatttccat
aaatcgcagccgctttttgtgtccggaggtgatgattacaaaattaaggtgtggaattat
aaattgcatagatgtctatttactcttcttggtcatcttgactatatccggactgtccag
ttccatcacgagtatccttggatagtaagtgcaagtgatgaccagacaatcagaatatgg
aactggcaatcacgtacttgcatttctgtgttaacggggcacaaccactatgtcatgtgt
gcttcatttcaccccaaagaagacttggttgtttcggcttctttggatcagactgttcgt
gtttgggatattggtgccttgaggaagaaaacagtatctcctgctgatgacattctccga
ttgtctcaaatgaatgcggacttctttggtggggttgatgctgttgtgaagtatgtcctg
gaaggccatgatcgaggggttaattgggcttcttttcatccaactctccctctgattgtt
tctggagctgatgatcgccaagtaaaaatctggcgcatgaatgacacaaaagcttgggaa
gtggacacattgagagggcacatgaacaatgtttcttgtgttctgtttcatgcaagacag
gacattattgtatcaaattcagaagacaagagcattagagtttgggatgctactaaaaga
actggcttgcagacattccgcagggagcatgacaggttctggattctttctgcccacccc
gagatgaatctactcgctgctggtcatgatagtggtatgattgtctttaagctagagaga
gaacgtcctgccttttctgtcagtggcgactctgttttttatgtcaaggatcggtttcta
cgcacttttgagtattccactcagaaagatacacagctgatacccatccgtcgtcctggt
tccaatagtttgaatcaagcgccacggactctttcttatagtcccactgagaatgcaatt
ttggtttgctcagacgtggatggtggttcatatgagctttatgttatacctaaagatagc
tacagcagaggtgatacagctcaagaggctaaaagaggtgctgggggttcggctgttttt
gtggctcgaaataggtttgctgtgcttgagaagagcagcaaccaagtcctggtgaagaac
ctaaaaaatgaagtagtgaaaaagagtgtcctgcctgttgctattgatgccatattctat
gctggtactgggaatctgctctgccgggccgaggacaaggttgtcatttttgatctccaa
caaagaattgttcttggagatcttcaagcctcttttgttaggtatgtggtttggtctcag
gatatggagagtgttgctttgctgagcaagcattcaattgttattgctgataaaaagctt
gtgcaccgctgcactcttcatgagaccattcgtgttaagagtggatcatgggatgataat
ggtgtttttatctacactacactgacgcacattaagtactgcctgcccaatggggatagt
ggcattataaagaccttggatgttccggtgtatgtaacaaagatatatgggaacacaatc
ttttgcctggaccgagatgggaaaaacggtccaatcataattgactcaacagaatatatt
tttaagttgtccctgctgaagaagagatatgatcatgttatgagcatgataaagaattca
gaactatgtggacaagccatgatcgcatatttgcagcagaagggcttcccacaagttgct
ctctattttgtgaaggatgagagaactcgcttcaacttagctcttgaaagtggtaacatc
gagaaagcccttgaatctgctaaaaaaattgacgagaaggattactggtacaggctagga
gttgaagccctacgacagggaaatgcaggaatcgttgaatatgcataccagaagacaaag
aactttgagaggctttcttttcattatctgataactggcaatctggacaagttgtcaaaa
atgatgaaaattgctgaggtaaaaaatgaagttatgggccagtttcataatgctttgtat
ctcggtgatgtgcaagagcgtgtgaaaattctggagaatgcgggtcacttgcccctggct
tacataacagctttcattcacgggctccatgacgtagtggagcgtttatctgcacaactg
ggagataatgttccttctcttcctgaagggagacaagcttctctgttgatccctccaagt
ccagtgctatgcgctggagattggcccctgttaatggtgagtaaaggcatatttgaaggc
tctcttgacgatgcaggtaaaggtgcagaagaagattatgaagaggctgcagatgctgat
tggggtgagggtttggatattggcgatgtggatcatctgcagaatggagacatcagtatg
gtgctggaggaggaagatgtgcacaatgagaatgatgaggagggaggatgggatcttgag
gatctagatctgcctcctgatgctgatacgccgaaggtggcttctaatgcccagtcttct
gtttttgtttgccccacgcctggtatgcctgtgagccaaatttgggtccagaagtcatct
cttgctgctgaacacgcagctgctggcaactttgatacagcacttcgtttgttgagccgt
cagttagggatatgcaattttgcccctttaaagtctcaatttattgatcttcacctgggc
agtcacagttacctacgtgcctgtacttcagcaccagttatatctgttgcagtagagaga
ggttggagtgaatctgcaagccccaatgtgcgaggccctcctgctcttatcttcgatttc
tctcaactagatgagaagctgaaggctggttacaaagcaacaaccaccggaaagttttct
gaagctcttcgacatttcctgtcaattcttcacacaattccactggttgtgattgaaaca
agaagagaggtggatgaagtgaaggaattggtaatcgtagtaaaggaatacattcttggc
ttgcaaatggagctcaagagaagggaactgaaggacgatccagttcgtcagcaagaactt
gcagcgtatttcacccattgcaagctccagccaccacacttgagacttgcactggctagt
gcaatgactgtttgcttcaaggcaaaaaatctgagcaccgcagccaactttgctaggcgg
cttcttgagagtaatccagccaatgagaatcaagcaagacaagctcgccaggttctgcag
gcggctgagaggaatatgacggatgccacgcagctcaactatgatttcagaaatcctttc
gttatatgcggagcgacatacgttccaatctatagagggcagagagatgtaacctgcccc
tactgcactacacattttgttccatctcagcaagggcagctatgcactgtttgtgatctt
gcagcagtcggagcagatgcatccggcttgttttgttctccttctcagatgagatga
DBGET
integrated database retrieval system
