Salvia splendens (scarlet sage): 121804458
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Entry
121804458 CDS
T07627
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03013
Nucleocytoplasmic transport
sspl03015
mRNA surveillance pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121804458
09122 Translation
03013 Nucleocytoplasmic transport
121804458
03015 mRNA surveillance pathway
121804458
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121804458
03041 Spliceosome [BR:
sspl03041
]
121804458
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121804458
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121804458
Spliceosome [BR:
sspl03041
]
Complex C
Other components
EJC/TREX
121804458
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121804458
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
121804458
NCBI-ProteinID:
XP_042059947
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All DBs
Position
5:complement(6924069..6928356)
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AA seq
428 aa
AA seq
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MGDAKDNEAYEEELLDYEEEEEKAPDSVIAKVNGESGKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNVKIHKDLLKNECPHIVVGTPGRILG
LARDKDLSLRNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVT
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagacgccaaagacaacgaagcttacgaagaggaactcctcgactacgaggaagaa
gaagagaaagcccccgattcagtcatcgcaaaagtcaacggagagtccggcaagaaaggc
tatgtggggatccatagttcaggatttagagacttcctcttgaagccagagctcttgaga
gctattgttgattcaggatttgaacatccttcagaagttcaacacgagtgcatacctcaa
gccattttgggaatggatgtcatctgccaagccaagtctggtatggggaaaactgctgtc
tttgttctttcgacattgcagcagattgaacccgttgcaggtcaagttgctgcacttgtg
ctatgccacacaagggaactggcttatcagatctgtcatgaatttgagcgattcagcacc
tatttgccagatattaaagttgctgttttctatggtggagtcaatgttaagattcacaaa
gatcttctgaagaatgaatgcccccacattgtggtaggaacaccaggaaggatacttggt
ctagcaagagacaaggacctttctctaaggaatgtgaggcatttcatccttgatgaatgt
gacaagatgctcgagtctcttgatatgagaagagatgtgcaggagattttcaaaatgaca
ccgcatgacaagcaagttatgatgttttcagctacactcagtaaagaaattcgacctgtt
tgcaaaaagttcatgcaagatcctatggagatatacgttgatgatgaggcgaagttaacc
cttcatggtcttgtacagcactacatcaaactgagtgagctggagaagaaccggaagctg
aatgatctgctggatgcattggacttcaatcaagttgttatctttgtcaaaagtgtcact
agagctgctgagctgaacaagttgcttgtggagtgtaactttccatcgatttgcattcac
tctggcatgtcgcaagaagaaagattgacccgttacaagggattcaaggagggacataag
aggattcttgtagcaactgatttggtaggaagaggaattgatatagagcgagttaatatt
gtgatcaactatgatatgccagattctgcagatacttatcttcaccgggtgggtagagct
gggaggtttggcaccaaaggactggccatcacgtttgtttcttctgcctctgattcagat
gttctaaatcaggtacaggagaggtttgaagttgatattaaagaactacctgaacagatt
gatacttccacatatatgccatcgtaa
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