Salvia splendens (scarlet sage): 121804538
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Entry
121804538 CDS
T07627
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121804538
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspl03021
]
121804538
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121804538
Transcription machinery [BR:
sspl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121804538
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
121804538
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
Torus
zf-CCCH
zf-CCCH_2
zf-CCCH_12
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
121804538
NCBI-ProteinID:
XP_042060056
LinkDB
All DBs
Position
5:complement(8555909..8562056)
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AA seq
686 aa
AA seq
DB search
MDDGDGGLSFDFEGGLDSGPAHPTASVPVIQSALDSNAAAAAANSHNPSAVPHPAAHAAE
GLGGGGARRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVY
KHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLASYNYGNSNKFS
QNRNPIYAQPAEKSQFPQGPNGIHQVGKPGTTEPGNAHPQPQQTQQLQQQGSQVQIQITA
NGQQSQASRTAIPLPQGTSRYFVVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDAVDN
VILIFSVNKTRHFQGCAKMISRIGGSVGGGNWKHAHGTAHYGRNFAVKWLKLCELSFDKT
RHLRNPYNENLPVKISRDCQELEPSVGEQLASSLYLEPDSDLMAVSVAAEQKREEEKAKG
VNLDNGSDNPDIVPFEDNEEEEEEESDEEDESPGQGFAGQGRGRGRGMMWSPHMPLARGA
RPFPGMRGFPPNMMGSDGFSYGPVNPDGFPMPDLFGMAPRGFGPYPRFSGDFAGPASGMM
FSGRPPAGGFGMMMGPGRPPFMGGMGVGGAARGSRPGGMPPFYPPPQQQPYQNPGRSKRD
QKAPSSDQNESSDQAKGQDITGPNDEERNQRRGKAQQDDHYSGGNSYRNDESESEDEAPR
RSRHGEGKKKRWSMEGDGTAVSVENI
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggatgatggagatgggggtttaagctttgacttcgagggcgggttagattcggggccc
gcgcatccgactgcatccgtgcccgtaatccaatcggcgttggattccaatgcggctgcc
gccgccgccaattctcacaatccttccgctgttccccatccggcggcgcatgcggcggag
gggttgggaggcggcggggcgaggaggagcttcaggcagacggtgtgccggcactggctg
cgatctctgtgcatgaaaggcgatgcctgtgggttccttcatcagtacgataagtcgcgg
atgccggtttgccggtttttccgcctctatggggagtgccgtgagcaggattgtgtgtat
aaacatacgaatgaagatatcaaggaatgcaatatgtacaagctaggattttgtccaaat
ggtcctgattgtaggtataggcatgcaaagttacctggacctccaccccctgtagaagaa
gttcttcagaaaattcagcaattggcttcatataactacggaaactcaaacaaattttct
cagaaccgtaatcctatttatgctcagccggcagaaaaatctcagtttccacaaggaccc
aatggtatacatcaagtaggaaaacctggtactacagaacctggtaatgctcatccacaa
ccacaacaaacacagcagcttcagcagcagggcagccaagttcaaatccagattacagcc
aacggccagcaaagccaagctagtaggactgctatacccctgccccaaggaacttctagg
tactttgtggtgaaaagttgcaacagagagaatctggaactatctgtccaacaaggtgta
tgggcaacacagagaagcaatgaggctaaacttaatgaagcatttgatgctgttgacaat
gtgattttgatcttttcagttaacaagactagacattttcagggttgtgcaaagatgatt
tccagaattggtggatccgtaggtggagggaactggaagcatgcccatgggactgctcat
tatggacgtaactttgctgtcaaatggttgaagctctgtgaactatcctttgacaaaact
cggcatttgagaaacccatataatgagaacttgccagtaaagatcagtagagactgtcaa
gaactcgagccttctgttggcgagcagttggcatcatcgctctacctcgaacccgacagt
gatttgatggctgtctcggttgcggctgagcagaagcgtgaagaggagaaagctaaggga
gtaaaccttgataatggaagtgacaacccagatattgtgccctttgaggacaatgaagaa
gaggaagaagaagaaagtgacgaggaggacgaaagccccgggcagggttttgcaggtcaa
ggtcggggacgaggtagaggtatgatgtggtcccctcacatgcctcttgctcgtggtgct
cgtccgttccccggcatgcgagggttccctccaaacatgatgggaagtgatggattctct
tatggtcctgtaaatccagatggtttcccaatgcctgatctctttggcatggcgccccgt
ggctttggaccgtaccctagattctccggtgattttgcaggtccagcctccgggatgatg
ttctcaggccggccgcctgccggtggattcgggatgatgatgggtcccggacggcctccc
tttatgggcggaatgggcgtcggaggcgcagctagaggcagcaggccggggggtatgccc
cctttttatccgccaccacagcaacagccttatcaaaacccgggtcgttcgaaaagagat
cagaaagcaccatctagcgatcagaacgagagctctgatcaagccaaggggcaagacatt
actggacctaatgatgaagagcggaatcagcgaagggggaaagctcagcaagatgatcat
tatagcggtgggaacagctaccggaacgatgagagcgaaagcgaagatgaggccccaagg
cggtcgagacacggtgaagggaagaagaagaggtggagcatggagggagatggtaccgcc
gtttccgtcgagaacatatag
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integrated database retrieval system
