KEGG   Salvia splendens (scarlet sage): 121804853
Entry
121804853         CDS       T07627                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
  KO
K12857  Prp8 binding protein
Organism
sspl  Salvia splendens (scarlet sage)
Pathway
sspl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sspl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    121804853
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sspl03041]
    121804853
Spliceosome [BR:sspl03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    121804853
 Complex C
   U5 SnRNP specific factors
    121804853
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_WDHD1_1st WDR55 Beta-prop_CAF1B_HIR1 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_EML NBCH_WD40 Beta-prop_SPT8 WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 ANAPC4_WD40 Beta-prop_IFT122_1st WDR90_beta-prop_4th WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_SCAP Beta-prop_IFT140_1st Beta-prop_WDR19_1st eIF2A Beta-prop_HPS5 Beta-prop_DCAF12 Beta-prop_RIG_1st Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 121804853
NCBI-ProteinID: XP_042060484
LinkDB
Position
5:complement(2113176..2115383)
AA seq 341 aa
MQVESALSVVGPKPTELSTFTHSFGPPGSGPNGKQRTSSLEAPIMLLAGHQSAVYSMKFN
PAGTVIASGSHDRDIFLWNVHGDCKNFMVLRGHKNAVLDVQWNTDGSQIISTSPDKTLRA
WDVETGKQIKKMVGHLFVVNSCCPARRGPPLIVSGSDDGTAKLWDMRQRGSIQSFPDKYQ
ITAVSFSDASDKIYTGGIDNDVKVWDLRRTDPVMKLQGHHDMITGMQLSPDGSYLLTNSM
DCSLRIWDMRPYAPQNRCVKILEGHQHNFEKNLLRCSWSPDGSKVTAGSSDCMVYVWDTT
SRRILYKLPGHTGSVNECVFHPNEPIIGSCSSDKQIYLGEI
NT seq 1026 nt   +upstreamnt  +downstreamnt
atgcaagtcgaaagtgctctttcggtggttggtccaaagccaacagagttgtcaactttc
acacacagctttggcccacctggttcaggacccaatgggaaacagcggacatcaagctta
gaagcgcctataatgttactggctgggcatcaaagtgcagtctactcaatgaagtttaat
cctgctgggactgtcattgcatctggttcgcatgacagggatatctttttgtggaatgtg
cacggtgactgcaaaaactttatggtcttgagagggcacaagaatgctgtcttggatgtt
cagtggaatactgatggttcacagataatatcaacaagccctgataaaactttaagggca
tgggatgttgagactgggaaacagattaagaagatggtcgggcacttgtttgttgtgaac
tcatgttgccctgctaggaggggacctcctcttatcgtcagtggatcggatgatggaact
gcaaaactttgggatatgcgtcaaaggggttccattcagagttttccagacaaataccag
atcacagcagtcagtttttctgatgcatctgataagatttacaccggtggcatcgacaat
gatgtcaaggtgtgggatttacgaagaactgatcctgttatgaagcttcaaggacatcat
gatatgatcactggtatgcagctgagtccagatgggtcttaccttctaacaaacagcatg
gattgctcccttcgaatatgggatatgcggccatatgcaccccagaatcgctgcgtgaag
attcttgaagggcatcaacacaattttgagaagaacctgctgaggtgtagctggtcacct
gatggaagcaaagttactgctggtagtagcgactgcatggtctacgtatgggacactact
tcaagacgcatactgtacaagctccctggccatactgggtcagtgaatgaatgtgtcttt
catcccaatgaaccgataatcgggtcttgcagcagcgacaagcagatatatcttggtgaa
atttag

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