Salvia splendens (scarlet sage): 121805319
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Entry
121805319 CDS
T07627
Name
(RefSeq) SWI/SNF complex subunit SWI3C-like isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121805319
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspl03021
]
121805319
03036 Chromosome and associated proteins [BR:
sspl03036
]
121805319
Transcription machinery [BR:
sspl03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121805319
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
121805319
PBAF complex
121805319
GBAF(ncBAF) complex
121805319
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
ZZ
Zn_ribbon_2
Motif
Other DBs
NCBI-GeneID:
121805319
NCBI-ProteinID:
XP_042061060
LinkDB
All DBs
Position
5:complement(1208828..1214462)
Genome browser
AA seq
769 aa
AA seq
DB search
MVASCLEARARWRKRKRDNSVARKSKQKEQDDDILDDNDDDDDPDLDPPQNHLESEDDPQ
IPNSDRTAQIIGEKGDEKLVAGGLKLCEFPVAIKREIYRPHSSVFRILEYERASRFGDTR
AQGQSGVPVLENISYGQLQALSAVPRDNPALLGVPSEETASGSGGGSYVITPPRIVAGSG
VTKRLGSAGRVHVVPVHSEWFSPSSVHRLERQVVPHFFSGKSAEHTPEKYMECRNFIVAK
YMENPEKHLAVANCQGLVAGIDNEDLTRIVRFLDHWGIINYCATPPKHEAPKEGAYLSVD
SNNELRVPLAALKSIDSLIKFDKPKCRLKATDVYPELAHQQEEESDFDSAIREQLSEHQC
NCCSRPISAVYYQSQKEVDVRLCLDCYQEGGFVAGHSSLDFMKENYTKDYGDLDGDSWSD
QETLLLLEGMQLYSENWNKIAEHVGSKSKAQCILHFVRLPLDGAPLDNIDVPSTSGSSSF
SNHDGHGRSEPNSNGTCLEGEDTENKFPFSSSGNPVMSLVAFIASALGPRVAAACAHASL
GSLSTESGKEGHAGGPLSQHDAEGATLSAEKVISAAEDGLDAAAMKSKLFADHEEREIQR
LSANIINHQLKRLELKLKQFAEIETLLMRECEQMERTRQRIAAECGLMMSGQFGSAGVQR
PMGLPGVSNAAMNNSAGNSRQQHVQGSHQPFVSGYGNTQPIHPHMPLMQQQQHQHQQQGM
YGLGPRLPLSAIHPSSSAPNAMFNPASNSQPSLSHPMLRPLSGTKSGLG
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atggttgcatcttgtttagaagcaagagcaaggtggaggaagcggaaaagggataactca
gtggcgcgtaagtccaagcagaaagagcaggatgatgacatacttgacgataatgatgac
gatgatgacccagatctggatcccccgcagaaccatctggaaagtgaagacgatccgcaa
attcctaattctgataggacagcccagataataggagagaaaggggatgaaaagttggtt
gctggtggactgaagttatgtgagtttccagttgcgatcaagagggagatatataggccc
cactcatctgtctttcgaattttggaatatgagagggcttcgagatttggggataccaga
gcccaagggcagagtggagtgccagtgttggagaatatttcttatgggcagctgcaggca
ctttctgcagtgcctcgagacaatccagctcttttaggggttccctcagaggagactgca
agtggtagtgggggtggttcgtatgtgatcacaccacctaggatagttgcaggctctggt
gttactaaaaggctcgggagtgcaggtcgtgttcatgttgtgccagtacattcagaatgg
ttttcaccaagttcagtgcatagattggaaagacaagtggttccacatttcttttctggg
aaatccgcagaacatacacctgaaaagtacatggagtgtcggaatttcattgttgcgaag
tatatggaaaaccctgaaaagcacctagcagtggctaactgccagggcctagtagctggt
attgataatgaggacttaactcgaattgtgaggttcctggatcattgggggattatcaac
tattgtgcaactcctcctaagcatgaggccccaaaggagggagcttacttgtctgtggac
tcaaataatgaacttcgcgtgcctttagctgctttgaaatctatagatagcttaatcaag
tttgataagccaaaatgtaggctgaaggcaactgatgtttatccagaacttgcacatcag
caggaagaggaatccgactttgacagtgctataagagagcaattatccgagcaccaatgc
aactgttgctcacgacctatttctgcagtgtactaccagtcacagaaggaggttgatgtg
agactctgtttggattgctatcaagagggtggattcgttgctggtcactctagccttgat
tttatgaaagagaattacacgaaagattatggagatctggatggggatagttggtctgac
caggaaacattgctgctgcttgagggaatgcagctttatagtgaaaactggaataaaatt
gccgagcatgttggctccaagtcaaaagcacagtgcattctccattttgtccgtcttcct
ctggatggtgctccactggacaatattgatgttccaagcacatctggttcatcgagtttt
agcaatcatgatggtcatgggagatcagagccaaattcaaatggtacctgcttggaagga
gaggacactgaaaataaatttcctttctcaagctctgggaacccggtcatgtctctggtg
gcgtttattgcttctgcattggggccaagagtggctgcagcctgtgcccatgcatctttg
ggttcattgtctacggagagtggcaaggaagggcatgctggaggtcctttgagccagcat
gatgctgaaggtgctacactatctgctgaaaaagtgatctctgcggccgaagatggtctt
gatgcagcagccatgaaatcaaaactttttgctgatcatgaagagcgtgaaatccagcgg
ctatctgctaatatcataaaccatcagttgaagagattggagctaaagttgaagcagttt
gcagaaattgaaaccttgctaatgagagaatgtgagcagatggaaaggacaaggcagagg
attgctgctgaatgcggcctcatgatgtcgggacagtttggttctgctggggtgcaacgg
ccaatgggactaccgggtgtcagtaatgctgctatgaacaattctgcaggaaatagtagg
cagcagcacgttcaaggctcccatcaacctttcgtttctggatacggaaatacccaaccc
atccacccccacatgcccctgatgcagcaacagcaacatcagcatcaacaacagggaatg
tatggccttggtcccaggctgcccctttcagctatacatccatcttcttcagcccctaat
gccatgttcaacccagcatccaattctcagccttctctcagccatcctatgctcagacca
ctatccgggactaaatctggtttaggttag
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