Salvia splendens (scarlet sage): 121805511
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Entry
121805511 CDS
T07627
Name
(RefSeq) pre-mRNA-processing factor 19 homolog 1-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
sspl04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121805511
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121805511
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121805511
04121 Ubiquitin system [BR:
sspl04121
]
121805511
03400 DNA repair and recombination proteins [BR:
sspl03400
]
121805511
Enzymes [BR:
sspl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121805511
Spliceosome [BR:
sspl03041
]
Complex B
Other components
Prp19 complex
121805511
Complex C
Prp19-CDC5 complex
121805511
Ubiquitin system [BR:
sspl04121
]
Ubiquitin ligases (E3)
U-box type E3
121805511
DNA repair and recombination proteins [BR:
sspl03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
121805511
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_WDR3_2nd
WD40_MABP1-WDR62_2nd
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_EML
Beta-prop_Vps41
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_HPS5
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_WDR41
Beta-prop_Aladin
PROPPIN
Beta-prop_DCAF12
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_VPS8
U-box
zf-Nse
DUF1635
KNTC1_N
Beta-prop_ACSF4
PAS_11
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
121805511
NCBI-ProteinID:
XP_042061329
LinkDB
All DBs
Position
5:6217707..6224634
Genome browser
AA seq
526 aa
AA seq
DB search
MNCSISGEVPEEPVVSKISGLLFEKRLIERHISDFGKCPITGDPMTMDDIVPVKTGKIVK
PRPMQTASIPGMLGMFQIEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVISRLKK
ERDEARELLAQAERQIPMSVAAQDTVNAAALSNGKRAIEDGEMGPDGKRVHQGISNSIIS
ELTDCNAALSQQRKKRQIPSALAPIDAVERYTQLTVNPLHKTNKPGILSMDILYSKDLIA
TAGADSNAVVFDRSSGQVVSTLSGHSKKVTSVKFAAEGELVVTGSADKTVRVWRGSEGGD
FDCRHILKDHTAEVQAVTVHATNNYFVTASLDNTWCFYELSSGLCLTQVEDTSGSAEGYT
SAAFHPDGLILGTGTSGAVVKIWDVKSQVNVAKFDGHIGAVTAISFSENGYFLATAAQDG
VKLWDLRRLKNFRTFSPYDENTPTQSVEFDHSGSYLALGGSDIRVYQVANVKSEWNCIKT
FPDLSGTGKITSVKFGTDAKYVAVGSMDRNLRVFGLPEEHDDQSQT
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgaattgttcaatttctggcgaggtgccggaggaacctgttgtctcgaaaatctccggt
ctccttttcgagaagcgcttaattgagcgtcacatctcggactttggtaaatgtcccatt
actggagatcctatgacaatggatgatattgtacccgtgaagactgggaagatagtgaag
cccaggccaatgcaaactgctagtatccctgggatgctgggaatgtttcagatagaatgg
gatggtttgatgctatcaaattttgcattggagcaacaattacatactgccaggcaagag
ctgagccatgcgttgtatcagcatgatgcggcatgtcgtgttatttcaaggctgaagaaa
gaaagagatgaggcaagagagttattggcacaagctgaaagacaaatacccatgtcagtg
gctgcacaagatacagtgaatgctgctgctttaagcaatgggaaaagagcaattgaggat
ggtgagatgggtcctgatgggaaaagggttcatcaaggaatctcgaatagtatcatttct
gagcttacagattgtaatgctgccctttcacaacaaaggaaaaagcgacagataccatca
gcattggctcctattgatgctgtggagaggtacactcaactcactgttaatcctcttcat
aaaaccaacaaacctgggattttgtcgatggacatcttgtactccaaggatctcattgcc
actgctggggctgactcgaatgctgtagtttttgatagatcttcaggccaagtagtatct
actctcagtggtcattcaaagaaggttacaagtgtcaaatttgctgcggaaggtgaatta
gtagttactggttctgctgataagacagttcgtgtatggagagggtctgaaggtggagat
tttgattgtaggcacattttgaaggatcatactgctgaggtgcaagctgttacagtccat
gcaaccaataactactttgtcactgcttctcttgataatacatggtgcttctatgaactt
tcttcaggtttatgtcttactcaggttgaagatacatcaggatctgctgagggatacaca
tcagcagcctttcatcctgatggtcttatccttggaacgggtacttctggagcagttgtt
aagatttgggatgtaaaaagtcaggtaaatgttgcaaaatttgatgggcatataggggct
gtaacagccatatcattttcagagaatggttacttcctggcgaccgcagcacaagatgga
gttaagctttgggatctgcgcaggctgaaaaattttaggactttttccccttatgatgaa
aatacacctacacaatcagtggaatttgaccatagtggaagttaccttgctctaggagga
tcagacatcagagtctatcaagtcgcaaacgtaaaatctgaatggaattgcattaaaaca
ttccctgacctgtctggcacaggcaaaataacaagtgttaagtttggcactgatgcaaaa
tacgtggctgttgggtcaatggatagaaatctcagagtatttgggctgcctgaggagcac
gatgatcaatcacagacatga
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