Salvia splendens (scarlet sage): 121805729
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Entry
121805729 CDS
T07627
Name
(RefSeq) protein ALTERED SEED GERMINATION 2-like isoform X1
KO
K11807
WD and tetratricopeptide repeats protein 1
Organism
sspl
Salvia splendens (scarlet sage)
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sspl04121
]
121805729
Ubiquitin system [BR:
sspl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
121805729
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_EML
NBCH_WD40
WDR55
Beta-prop_TEP1_C
TPR_1
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_DCAF12
ANAPC3
Beta-prop_IFT140_1st
TPR_17
Motif
Other DBs
NCBI-GeneID:
121805729
NCBI-ProteinID:
XP_042061631
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Position
5:37057664..37073845
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AA seq
723 aa
AA seq
DB search
MDCSICFHDGSITDLINSRTLHTHNDFNHAVQMHSSLVRRLSLERELEGHRGCVNTIAWN
SEGSMLISGSDDTQVNIWSYSSRKLMDSIETGHSANIFCTKFVPETSDELVVSGAADAEV
EPGNPNLVWSASEDGTFRQHDFREGSSCPPAGSSHQECRNVLLDLRCGAKRSLADPPKQP
LSLKSCDISSTRPHLVLVGGSDAFARVYDRRMLPPLSSSQNKLPPPPCVDYFCPMHLSDL
GHSSLHPTHVAFSPNGEELLVNYGGEHVYLMDVNNVLGNTVRYTSRDVSKLTSLSPKLDK
AEVKSSFSGVSLNGFPVRNKAAGLDKCRKLIRFAEKSLKGETDRYYGIEACNEVLDGRGY
EIDPTLVHECLCIRASLLLKRRWKNDSHMAIRDCHRALKLNPSSTGALICMAEALSMLEK
HKEALEFAFAAQSLAPSDFEIMERVEHIKKSSAAAEADKTSMESDKRSRANYRAKRVLSL
SDIIYHTEGENDTPSGPEREDSDYDDVLELDFETLIAAEGGHDVESDVLPGNLNLRIHRR
GDLNLNAERVTGSFGSPVSSCENEKVPKRSEMAIDMRQRYVGHCNTGTDIKQASFIGQRG
EYIASGSDDGRWFIWEKKTGRLLKMLHGDNAIVNCIQCHPYDCVIATSGIDSTIKIWTPT
SPVPSSVAGDEGPEPSNVLEAMEENQRRLYCTREAILPFEILERFRMHEFAEGSFHPFEC
TQS
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggactgctccatctgctttcacgatggcagcatcaccgacttgattaacagtcgcact
ctccacactcataatgattttaaccatgctgtgcagatgcactcctcactcgtgcggagg
ctctcactggaaagagaactagaggggcaccgtggctgtgtgaatactatagcttggaat
tcagaaggctctatgctaatttcaggatctgatgatactcaagttaacatctggtcctat
tcaagtcgaaaacttatggactcaattgagactggccattctgccaatattttctgtaca
aaatttgtccctgaaacttcagatgaacttgtggtttctggggcagcagacgctgaggtg
gaacctggaaatcctaatctggtgtggagtgccagtgaagatggaacatttcggcagcac
gattttcgtgagggttcttcttgtcctccagctgggtcctctcatcaagaatgtcgtaat
gttcttctcgatttgcgttgtggagctaagaggtcactagcagatcctccaaagcagcct
ctttctttgaagtcttgtgatatcagttctactaggccccatttagtccttgtcggcggc
agtgatgcatttgcacgtgtatatgatagaagaatgctgccgccactatcatctagtcag
aataagttgccaccacctccatgcgtggactacttttgcccaatgcatctatccgacctg
ggacattccagcttgcatcctactcatgttgctttcagtcctaacggggaggagcttctt
gttaattatggtggggagcatgtatacctcatggacgttaataatgttttggggaataca
gtgagatatacctcaagagatgtctcaaagctaaccagcctgagtcccaaacttgacaaa
gcagaagtgaaatcatcgttttcaggtgtatccctaaatggtttccctgtgagaaacaaa
gctgcaggacttgataagtgcaggaaactaattcgttttgctgaaaaatcattgaaagga
gaaacagatcgttattatggaattgaggcttgtaatgaagtgttggatggtcgtggttat
gagattgacccaacattggtgcatgagtgtttgtgcatacgtgcctccttgttactcaag
aggcggtggaaaaatgattctcacatggctatcagagactgtcacagagctctcaaacta
aatccttcttcaactggggcactcatttgcatggctgaagcactgtccatgctggaaaaa
cataaggaagcattggagtttgcttttgcagctcaatctttagctccatctgattttgaa
attatggagagggtggagcatataaagaagagttcggctgcagctgaagctgacaaaaca
agcatggaaagtgacaaaagatcaagggcaaattatcgagctaaaagagtactttctcta
agtgacataatctaccatacagaaggagaaaatgatactccaagtggacctgaaagagaa
gactctgattacgatgatgtgcttgaactggatttcgaaacattaatagctgccgaagga
gggcatgatgttgagtccgatgttctcccaggaaacttaaatttgagaattcacaggaga
ggcgatttgaatttgaacgcagagagggtgactgggtcttttggatcacctgtatcttca
tgtgaaaacgagaaagtgccaaaacggtctgagatggcgatagatatgaggcagagatat
gttggccattgtaatacaggcactgacataaagcaagccagttttattggccaaagaggt
gaatatattgctagtggaagtgatgatggtagatggtttatttgggaaaagaaaactggg
cgattattgaagatgctgcatggagataatgccattgtcaactgtatacaatgccatcca
tatgattgtgttattgcaactagtggaatcgatagcacgataaagatctggactccaaca
tctcctgtcccctccagtgttgctggggatgaaggaccagagccttcaaatgtgttagaa
gctatggaagagaatcagcgcagattatattgcacccgtgaagctattttgccctttgaa
attctggagcgtttccgaatgcatgagtttgcagaaggaagttttcatccttttgagtgc
acacagagttga
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