Salvia splendens (scarlet sage): 121805756
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Entry
121805756 CDS
T07627
Name
(RefSeq) WD repeat-containing protein PCN-like
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121805756
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sspl03009
]
121805756
Ribosome biogenesis [BR:
sspl03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
121805756
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
Beta-prop_WDR5
WD40_CDC20-Fz
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_SPT8
Beta-prop_EML
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_SCAP
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Ge1_WD40
Beta-prop_Aladin
Pep3_Vps18
Beta-prop_WDR41
WDR54
ActA
Motif
Other DBs
NCBI-GeneID:
121805756
NCBI-ProteinID:
XP_042061675
LinkDB
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Position
5:37520124..37528147
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AA seq
818 aa
AA seq
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MLKVHRINSVEWTPSPVVALATSADSSQVAAVRADGSLEIWLVSPGSVGWHCQLTIHGDP
NSRVSSLVWCQSGPRGGPLGRLLSSSIDGSISEWDLFDLRQKTVLDSIGFSIWQIAAEPC
NHLRRNERQGAKTYQNDQTSTSITGDIDDEENSESEDEDDNKRAELVHEQIDAESTRLAI
ACDDGCVRIYRVSDAEELIYNRTLPRVSGRTLSVTWSSDGSRIYSGSSDGFIRCWDAKLS
QEIYRITVGHGYLGGDNDLCIWSLIALRCGTIASGDSTGCVKFWDGQFGTLLQEHSNHKG
DVNALAAAPSHNRVFSAGSDGQIILYKLSTEAVDSGDEKFVPAVKKWVYVGNVRSHTHDI
RALTLAVPISLEDLPPDEKVKRSRGPDKPLDFSYHKWAHLGVPMLISAGDDTKLFAYSVK
EFTKFSPHDICPAPQRMPMQLVIKTLFNQTPLLLVQSANFLDIFCVQLQNGSVTDIGPSS
SGGSARTDLVARIKCKVSRKIICSTISSSGELVAYSDYIKPNLFYLKRIKSGTGWSVDKR
KLPQGLPFAHFMVFSSDSSKLILAGQDRRIYVVDVGNEDLLHAFTPCRKENVDGLPPSEP
PITKMFTSNDGQWLAAVNCYGDVYIFNLETLRQHWFISRLDGAAVTAGGFTPKNSNILII
STSSNQVYALDVEAKQLGEWSMRHTFSLPRRYQEFPGEVIGLSFHPSSTSSSVIVYSPRA
MCLIDFGMPVDRDDDTDLTNGLVSTTRKVHINGVSKRKRQGSENKHGGRKNFEFCAFRDP
VLFVEHLSKNSLLVIDKPWTQVVGTFDAQPVHRHIFGT
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgctaaaagttcaccgaatcaattcggtggaatggaccccgtcgccggttgtagctcta
gctacgagcgctgatagctcgcaggtcgccgccgttcgtgccgacggctcgctcgagatt
tggcttgtctctccgggttctgtcggctggcactgtcagctcacaatacacggggatcct
aattctagagtgtcttcgctggtttggtgtcagtccgggccgaggggtggaccgttgggc
cgattgctgtcttccagcattgacgggtccatttccgagtgggatttgttcgatttgaga
caaaagacagtgctagattctattggtttctcgatttggcaaattgctgcagagccatgc
aatcatttgcgtcgcaatgagaggcagggagcaaaaacttatcagaatgatcagactagc
acatcaattaccggtgacattgatgatgaggagaatagtgaaagtgaagatgaagacgat
aataaacgtgctgagctggttcatgagcaaattgacgctgaaagtacccggctagcaatt
gcctgtgacgatggttgtgtccggatctatcgtgtttctgatgcagaagaacttatttat
aatagaacgttgcctcgggtcagtgggcgtacacttagtgtaacctggagttcagatgga
agtaggatttattcagggagtagcgacgggttcataaggtgttgggatgctaagttgtct
caggagatatacagaataactgttggtcatggatatctgggtggtgataatgatctttgc
atatggtcattaattgcattaaggtgtgggacaatagccagtggggatagtactggttgt
gtgaagttctgggatggtcagtttggaacacttttgcaggaacattcaaatcacaaaggt
gatgtaaatgctttagctgcagctcccagccataacagagtattttctgctggttctgat
ggtcagatcatactgtataaactttctactgaggctgttgattctggagatgaaaaattt
gtcccagctgtcaagaaatgggtctatgttggcaatgtgagatctcatactcatgatata
agggcattgaccttagctgtacctatcagccttgaagatctgcctcctgatgaaaaagtt
aagaggtcgcgaggtccggacaagccccttgatttcagttaccataaatgggctcatttg
ggtgtgccaatgcttatatcggcgggcgacgacactaaactttttgcatattctgtaaag
gaatttactaagttttctcctcatgacatatgccctgcaccacagagaatgccaatgcaa
cttgttattaaaacacttttcaatcagacaccattacttttggttcagtctgcaaatttc
ttagacatcttttgcgtgcaattgcaaaatggtagtgtaactgatatcggtcctagctca
tctggtgggtctgcacgtactgatttagtggccagaattaaatgcaaggtttctcggaag
atcatttgtagtacaatatcttcatcaggagaactagttgcctactcagattacataaaa
cctaatttattttatttaaaaagaatcaaatcaggcacaggttggtctgtagataaaagg
aagctccctcagggattgccatttgcccatttcatggttttcagctccgactcttcgaaa
ttaatactggctgggcaggacagaaggatatatgttgtagatgttggaaatgaggatctc
ctccatgctttcactccttgccggaaagagaatgtagatggtctcccgcctagcgaacct
cccattacaaaaatgttcacaagcaatgacggccagtggttagctgctgtcaactgctat
ggagatgtctatattttcaatcttgagacactgaggcaacactggttcatatcaagactg
gatggagctgcggttactgctggtggttttactcctaaaaatagcaacattcttatcatc
tccacctcttcaaatcaggtttatgcattagatgtggaggctaaacaattgggggagtgg
tccatgcgtcacacattttctctgccaaggagataccaagaatttcctggagaagttatt
ggtctttcgttccacccatcctcaacttcatcttctgtcattgtctatagtcccagggct
atgtgcttgatcgattttgggatgcctgtcgacagggatgatgacactgacttgacaaat
ggtctggtttcaacaacaagaaaggtacacatcaatggagtgagtaagcggaaacgacag
ggttcagaaaataaacacggcggtagaaagaactttgaattttgtgcattcagagatcct
gttttatttgttgagcatctatcgaaaaactctctcttggtcatagacaagccatggaca
caagttgttggcacattcgacgcccagcccgtccacagacatatttttggaacataa
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