Salvia splendens (scarlet sage): 121805769
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Entry
121805769 CDS
T07627
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1-like
KO
K14411
RNA-binding protein Musashi
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121805769
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121805769
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
121805769
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
121805769
NCBI-ProteinID:
XP_042061694
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All DBs
Position
5:complement(12288259..12291723)
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AA seq
472 aa
AA seq
DB search
MEMDAGKLFIGGIPWDTSEDRLRQYFQAFGEVVEAVIMKDRATGRARGFGFIVFADASVA
EKVVKEKHVIDGRTVEAKKAVPRDDHQNFNRNSGSIQGSPSHVRTKKIFVGGLPSTITES
DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLFKTFHELCGKMVEVKR
AVPKELSPGPTRCPSPGYNYGLSRASSFLNAYSPGYNPNSTSGYGMRMDGRFSPVTAGRS
GYPPYSPSNHNFGLTLDSGLGLNHGVSRDSGLGYGNGMNSYFSGDFSRYGSSNGYDLGSA
GTGSFMSSTNRNMWGNGSPNFVTNSATSNDFIGTRTGNAGIGSGFGSIGEIWGRSPVSAK
STEAGSVSRENIAYDHGDNSFVDRASYTRENGGIAGSASFYSTPNNIYDENYRNLYGGSF
NGDEAWRSSSQELEGSASYGYGRGSGTAEAASETAAGYAGGYNVRSDRGIAA
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggatgctgggaagctgtttattggtgggattccgtgggacacgagcgaggac
cgtctgagacaatatttccaagcttttggtgaagtggtggaagctgtgataatgaaggat
cgtgctacaggccgtgctcgtggctttggtttcattgttttcgccgatgcttctgttgct
gaaaaagttgtgaaagaaaaacatgtcatagatggcagaaccgtggaagcaaagaaagct
gttccgagggatgatcaccagaacttcaatagaaacagtgggagcatccaaggatcccct
agtcatgtccgcacaaagaagatttttgtgggaggtttaccatctactatcacagaaagt
gacttcaagaagtattttgatcaatttggaacaataactgatgttgttgtgatgtatgat
cacaatacacaaaggcctagaggctttggttttataacttatgattcagaagaagcagtt
gataaagttctattcaaaacctttcatgagctttgtgggaaaatggttgaggttaagaga
gctgttcccaaagagttatctccaggaccaacgcgatgcccttcccctggctataactat
ggcctgagtagagcaagcagtttccttaatgcttattcgcctggatataatccaaattct
acaagtggctatggaatgagaatggatggtcgctttagtcctgtaactgctggtcgaagt
ggatatcctccttacagccccagtaaccataactttggactgactttggattctggactc
ggtttgaaccatggggtgagtagggattctggtttgggctatggaaatgggatgaattct
tattttagtggagactttagtcgatatggtagttcaaatggatatgacttgggcagtgct
ggaactggttcttttatgagcagtacgaaccggaacatgtggggaaatggtagtcctaat
tttgtcacaaactcagcaacttctaatgattttattggaactcgaactggaaatgctggg
ataggtagtggttttggaagtataggagagatttggggccgttcacctgtttctgctaaa
agcacagaagctggctctgtaagccgagaaaacattgcttatgaccatggggacaatagc
tttgttgacagagcaagttataccagagaaaatggaggcattgctggctccgcatctttt
tattctacgccaaataatatttatgacgagaactacaggaacttgtatggaggctcgttt
aatggggatgaggcctggcgttcttcatctcaagagcttgagggatctgcctcgtatggt
tatgggcgtgggagtggcactgctgaggccgcatctgaaactgcagctggttatgctggt
ggttataatgttagatcagatagagggatcgcagcctag
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