Salvia splendens (scarlet sage): 121805821
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Entry
121805821 CDS
T07627
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl04120
Ubiquitin mediated proteolysis
sspl04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121805821
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
121805821
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sspl04121
]
121805821
Enzymes [BR:
sspl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121805821
Ubiquitin system [BR:
sspl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121805821
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
121805821
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_EIPR1
zf-C3HC4_2
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_DCAF4
EIF3I
Beta-prop_WDR90_POC16_2nd
zf-C3HC4
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
Beta-prop_EML
zf-C3HC4_3
zf-RING_2
WD40_RFWD3
zf-C3HC4_4
Beta-prop_WDR75_1st
zf-RING_UBOX
WD40_like
Beta-prop_DCAF12
Beta-prop_WDR35_TULP_N
Beta-prop_SCAP
U-box
zf-RING_5
zf-rbx1
YycC
DUF1664
Baculo_p24
Vfa1
zf-Nse
Motif
Other DBs
NCBI-GeneID:
121805821
NCBI-ProteinID:
XP_042061766
LinkDB
All DBs
Position
5:8165954..8172190
Genome browser
AA seq
676 aa
AA seq
DB search
MGGITTSIGALVPSVKSELPEEPSTAPPSTSTAPEEDRGAVDAEKDVLCPICMQIIKDAF
LTACGHSFCYMCIVTHLQNKNDCPCCSHFLTKTHLYPNFLLNKLLAKTSARQIAKTSTPI
EQLRQALEQGCEASVKELESLLHILVEKKKKMEQEEAETNMQILLDFLVFLKKKKLDELN
EIQSDLQYIKQDIHAVEKRRIELYHRRDRYAPKMRMLSNDPHSKSLWPSLMDKHRDTTTV
SRATTAPDQVRLSCSLSKIQKVDLRSSASPLTPWKDASGASDNQNLTPSGLALARKRRVH
AQFNELQDCYLQKRRYWSKLHSTKQERDSPGVTREGYTEGLEDFQSVLSTFTRYSRLQVV
AELRQGDLFHSANIVSSIEFDRDDELFATAGVSRRIKVFEFSSVVNEPAGVQCPVAEMMT
RSKLSCLSWNKCTKSHIASSDYEGIVTVWDVTTRQSVMEYEEHEKRAWSVDFSPTEPSML
VSGSDDCKVKVWCTKQEASALNIDMKANICSVKYNPGSSVHIAVGSADHNIYYYDLRNIS
QPLHTLGGHRKAVSYVKFLSNNELGSASTDNTLRLWDVKENVPLRIFRGHANEKNFVGLS
VNSEYLACGSETNEVYAYHKAISRPAAWHRFVNSGGDEAEEEPVSYFISAVCWKSDSPTM
LTANSQGTIKVLVLAP
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgggcggcatcaccacttcaatcggcgctctggtgccctcggtcaagtccgagctgccg
gaagagccctcgacggctccgccctctacttccacggcgccggaggaggatcggggggcg
gtcgatgcggagaaagacgttctctgcccgatatgcatgcaaatcatcaaggacgccttc
ctcacggcgtgcggccacagtttttgctacatgtgtatcgtgacgcatctgcagaataag
aatgattgtccgtgttgctctcacttcctcaccaagactcatctctatcctaattttctc
ctcaataagttacttgcaaagacttctgcgcgtcaaatagctaaaacttccacgccaatt
gaacaacttcgccaggctctggaacagggatgcgaagcatcagttaaggagcttgagagc
ctcctgcatattcttgttgagaagaaaaagaaaatggagcaagaagaagctgagacaaat
atgcagattttgcttgactttttggttttcttgaaaaagaaaaaacttgatgagctcaat
gagatacaatctgacctccagtacataaaacaagatattcacgctgtggagaagcgtcga
atagagttgtatcatagaagagatagatacgctccgaaaatgagaatgctatctaatgat
ccgcattcgaagtctctatggccatcattgatggacaaacatagagataccaccactgtc
tctagggctaccactgcaccagaccaggtccgcttgagttgtagtctttctaaaatccag
aaagttgatttaagatcttctgcaagccctttaaccccttggaaggatgcttctggtgcg
tcagataaccaaaatctcactccatctggactggctctggcaagaaagaggcgggtccat
gctcagttcaatgagctacaagattgttacttgcaaaaacgaagatactggtcaaagcta
cattcaacaaagcaagaacgagattcacctggtgtaaccagagaaggttacacagaagga
cttgaggattttcagtctgttctgtcgaccttcacaagatacagtcggttgcaggttgtt
gctgaactaagacagggcgatttgtttcactcagcgaacattgtatccagtatagaattt
gaccgagatgatgaactgtttgctactgctggagtttcacgacgtatcaaagtttttgaa
ttttcatcagtagttaatgaacctgctggtgttcaatgcccagttgcggaaatgatgacg
cgatcgaaacttagctgtttaagctggaacaagtgcactaaaagtcacatagccagcagt
gactatgaaggcatagtaactgtttgggatgtgaccactcgacagagtgtgatggaatat
gaggaacatgaaaaacgtgcttggagtgttgatttttcaccaacagaaccttcaatgcta
gtctcgggtagtgatgattgcaaggtcaaagtttggtgtacaaaacaggaggcaagtgct
ctcaacattgatatgaaagctaacatatgctccgttaaatataaccctggatctagtgtt
cacatagcggttgggtctgcagatcacaatatttattattatgacttgagaaatataagc
cagccattacatacattaggtggtcacagaaaggctgtatcatatgtgaaatttttgtcc
aacaatgagcttggctcagcatctacagacaatacgttgcgcctgtgggatgtcaaagaa
aatgtacctctacgcatatttaggggtcatgcaaatgagaagaacttcgtgggcctttcg
gttaacagtgagtacctagcctgtggcagcgaaactaatgaagtatatgcgtatcacaag
gccatatcgagaccagcagcgtggcatagatttgtcaactctggtggtgatgaagcagaa
gaagagcccgtgtcgtacttcattagtgctgtgtgttggaaaagtgatagcccaacaatg
ttaactgcaaacagtcaaggaacaattaaggttcttgttcttgctccctga
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