KEGG   Salvia splendens (scarlet sage): 121806220
Entry
121806220         CDS       T07627                                 
Name
(RefSeq) exosome complex component RRP41 homolog
  KO
K11600  exosome complex component RRP41
Organism
sspl  Salvia splendens (scarlet sage)
Pathway
sspl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sspl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    121806220
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sspl03019]
    121806220
Messenger RNA biogenesis [BR:sspl03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     121806220
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     121806220
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 121806220
NCBI-ProteinID: XP_042062120
LinkDB
Position
6:4899116..4901727
AA seq 241 aa
MEFVNPEGLRLDGRRPMEMRQLRAEIGVVSKADGSAVFEMGNTKVIAAVYGPREVQNRSQ
QSNDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISMVIRQTMEACILTHLMPRSQIDIF
VQVLQADGGTRSACINAATLALADAGIPMTDIVTSCSAGFLNGTPLLDLNYVEDSAGGPD
VTVGILPKLDKVTLLQMDSKLQMETFETVMQLATEGCKAVASYIREVLLENTKQLESRRG
V
NT seq 726 nt   +upstreamnt  +downstreamnt
atggaatttgttaatcctgaaggtcttcggttggacggtcgccgtcctatggagatgagg
cagcttcgtgcagaaataggcgtagtttcaaaagccgacggctcagctgtttttgagatg
gggaacacgaaagtcattgctgctgtttatggcccgagagaggtccaaaataggagtcaa
caaagtaatgatcaggcactggtccgctgtgagtatagcatggctaatttcagtactgga
gatcggatgaggaaacctaagggtgacaggcgatcaacagagatatctatggtcattcgt
cagacgatggaagcatgcatattgactcacttgatgcctcgatctcagattgatatattc
gtccaagttcttcaagcagatggaggaacaagatcagcatgcataaatgctgcaactttg
gcccttgctgatgctggtatccctatgaccgatattgttacctcctgcagtgctggattt
ctcaatgggacccctctgcttgatctgaactacgttgaagatagtgctggtggacctgat
gttactgttggtattctgcctaagttagacaaagtcaccctccttcagatggactccaaa
ctgcaaatggagacatttgaaactgtcatgcagctagcaacagaaggttgcaaagcagtg
gcaagttacattcgtgaggtattactggagaacaccaagcaattggagtctcgcagaggt
gtatag

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