Salvia splendens (scarlet sage): 121807109
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Entry
121807109 CDS
T07627
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 28-like
KO
K13181
ATP-dependent RNA helicase DDX27 [EC:
5.6.2.7
]
Organism
sspl
Salvia splendens (scarlet sage)
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121807109
03009 Ribosome biogenesis [BR:
sspl03009
]
121807109
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121807109
Spliceosome [BR:
sspl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
121807109
Ribosome biogenesis [BR:
sspl03009
]
Eukaryotic type
Pre-60S particles
Helicases
121807109
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
121807109
NCBI-ProteinID:
XP_042063243
LinkDB
All DBs
Position
1:complement(1497596..1506402)
Genome browser
AA seq
742 aa
AA seq
DB search
MEKFVFDPPSDEEIDHSTDGDSEEEVVVRRGKKPTQSPWDFSSYTESIADEHARRSTTSI
DYKISKALERRPIAAAEEADSEERSDSEIEIQDGYRSEEEEGEDAPTTSGYAGKAFFSSE
DGVTFEANSFLDFPLSRPLLLACKELGYVKPTPIQAACIPYALRQRDICRSAITGSGKTA
AFALPTLERLLLWRKSRPAVRALILTPTRELAIQIDSMIKTLAKHVPTIRSCVIVGGVSM
KVQEAALRTLPDIVVATPGRMIDHLRNSMSVHLDELAVLILDEADRLLELGFSAEINELV
KLCSKSRQTMLFSATMTEKVDELANLSLKRPVRLSADPRAKRPVALTEEVICIRRMHEGN
QEAVLLSICSKSFTSRVIVFSGTKKAAHRLKILFGLAGFKAAELHGDLTQAQRMDALDLF
RKQQVDFLIATDVAARGLDIVGVRTVINFACPRDITSYIHRVGRTARAGKEGHAVTFVTD
EDRSLLNAIVKRVGSRMRKRTVAEKSILKWSEIIEQMEDQVSSVLREEREEMALRKAEME
VTKAENMIAHRDEIYSRPKRTWFVTEREKKLAAKALKEASDKGKGSGRNTISAEQAEELK
MKEKRKREHEKNLPRKKRRKLESAREMLEDEADVKGGEKKDKEKNGISLVDVAYRRAKAV
KAASKAVQAGKIVKKHVKNPTQSRTDEMQELFQDDMSEKKQKRALQGGLKKKSSFKSKSR
TSGGRLRYRNLARSFEYWRDNV
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atggagaaattcgtgttcgatccccccagcgatgaggaaatcgaccacagcaccgacggc
gactccgaagaagaagttgtagtacggagaggcaagaaacctacccagtcgccttgggat
ttctcctcctacaccgaatcgatcgccgacgagcacgcgcgacggagcacaacttcgata
gactacaaaattagtaaagctctcgagcggcgccccatcgccgccgcagaagaagctgat
tccgaggagcggtcggattccgaaatcgagatccaggacggttataggtctgaagaggaa
gagggcgaagacgccccgacgactagtggatatgctggaaaagcgttcttttcatccgag
gatggtgtaaccttcgaagcaaactcgtttctggattttcctctctcgaggccattgcta
ctggcgtgtaaagaattgggttatgtaaagcctactcccattcaggctgcttgtatacct
tatgctttacgtcagcgtgatatatgcaggagtgctattactggatctgggaagacagct
gcttttgctctaccaaccctggagaggcttttgttatggcgaaagagtagaccagctgtt
agagctctaattcttacacctacaagggagttggctattcagattgatagtatgattaag
acacttgctaagcatgtaccgaccatcagaagttgtgtgattgttggtggagtttcgatg
aaggtgcaagaagctgctctaagaactttgccagatatagttgttgcaactccaggacgg
atgatagatcacttacgcaactctatgtccgtacatctggacgagcttgcagttttgata
cttgatgaagctgatcggcttcttgagcttggatttagtgctgaaattaatgaattggta
aaattatgttctaaaagtagacaaaccatgttattctcagcaaccatgactgagaaagtt
gatgagcttgccaatctttccttgaaaagacctgtacgcttgtcagctgatccaagagca
aagcgaccagttgcattaactgaagaggtaatttgcatacgccgaatgcacgaaggaaat
caggaagcagttcttctttccatatgctccaagagctttacatctagagtgattgtcttc
agtggtaccaagaaagcagctcatagattaaagattctatttgggttggctgggtttaaa
gcagctgagcttcacggggacctcacccaagcccagcgtatggacgcattggaccttttc
aggaaacaacaagtagactttctaattgcaacagatgttgctgctcgtggtcttgatatc
gttggtgttcgtacagtcataaattttgcatgtccacgagacattacgagttacatccat
cgagtgggtcgcactgccagggctggtaaagaaggacatgctgttacctttgttactgat
gaggatcgatctctcctaaatgctatagttaaaagagttggttctaggatgaggaaaaga
accgttgctgaaaagtcaatactgaagtggtctgaaataattgagcaaatggaagatcaa
gtatcatcagttcttcgagaagaacgggaggagatggcactaaggaaagctgaaatggag
gttacaaaggcagaaaatatgatcgctcacagagatgaaatttattcacgccctaaaaga
acgtggtttgttactgaaagggaaaagaaacttgctgctaaagcattgaaggaagcttcg
gataagggaaaaggttctggacgtaacacaattagtgcagaacaagcagaggagttgaag
atgaaggaaaagagaaagcgagagcatgagaaaaacttgccaaggaagaagagaaggaaa
ttggaatcggctagagagatgttagaggacgaggctgatgtcaagggtggagagaaaaag
gataaagagaaaaatggaatttcacttgttgatgttgcatatcgaagagcaaaagcagtc
aaggctgcaagcaaggctgttcaggccggcaagattgtgaaaaaacatgttaaaaatcct
acgcaatcaagaacagacgagatgcaagaacttttccaggatgacatgagtgagaaaaag
cagaaaagagccctccaaggtggtttgaagaagaagtcatcgttcaagagcaagtcacgt
acaagcggaggtaggttaagatatcggaatcttgctcgatcgtttgaatactggagggac
aacgtctaa
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