Salvia splendens (scarlet sage): 121808014
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Entry
121808014 CDS
T07627
Name
(RefSeq) small RNA degrading nuclease 1-like
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121808014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sspl03009
]
121808014
Ribosome biogenesis [BR:
sspl03009
]
Eukaryotic type
Pre-60S particles
RNases
121808014
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_T
DEDDh_C
DNA_pol_A_exo1
ATPase_expression_N
Motif
Other DBs
NCBI-GeneID:
121808014
NCBI-ProteinID:
XP_042064284
LinkDB
All DBs
Position
6:complement(28091500..28095603)
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AA seq
485 aa
AA seq
DB search
MDELVASAKKEVLVEMVKLAQKKEMAGSKGSWKEFLKVHDKKFGASLSDPSRRSVDDLGA
FLKTFLQDDDLKFFKQVLKCHSNRQDVEQLKKDSPDDETAEQKLVRLTLEHPQYPVDYSF
PSHELEWMVVKYKKKSKAMKSTEIIAIDCEMVLCEDGTEALVKVCAVDRHLKVKLDKVVN
PNKAIADYRTDITGISAKDLDGVTYTLNDVQKSMRKLLSHETILVGHSVNNDLQAMKLDC
TRVIDTSYVFKYANRTNRKPSLSLLCKALLGYELRKGSLHNCLDDARAAMKLVLARLEGK
IDDIVAEEVKDLDKARLLIHRVPVNVSVEDLKNVLPGDFCIEVKVKKGKTYSAFAIFSTQ
QKAIKTFENVDGDLEKDSCGRAQKLVKFELDSGTTGSFYVCKIVGDDSVGDEIKKRPAED
DSLGIAKKPRTDETSIQFEDSNKCSDHCEMHLKEIGRLEQELSQRETEISSLNKIIAALA
RKQGL
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggacgagttagtcgcctctgcaaaaaaggaggttttagtagaaatggtgaaattagca
cagaagaaagaaatggctgggagtaaaggtagttggaaggaatttctcaaagtccatgac
aagaagtttggggcaagtttgagcgatccttcacgaaggtctgttgatgatttaggtgcc
tttttgaagactttcttgcaagacgatgatttgaagttcttcaagcaggtattgaagtgt
cattctaaccgccaagatgtggaacaacttaagaaagattctcctgatgatgaaactgct
gaacagaagctagtccgtttgaccttggagcatcctcagtaccctgttgattattccttc
ccctcgcatgagctggaatggatggttgtaaaatacaaaaagaagtcgaaggcaatgaaa
tctaccgagattattgctatagattgtgagatggttctttgtgaagatggaactgaagct
ttggtgaaggtctgtgcagtagaccgccatttgaaggttaaactcgataaagttgtaaat
ccaaacaaagctattgctgattatcgaacggatataactggaatctctgcaaaagatttg
gatggagtgacttacacattaaatgatgtgcagaagtccatgaggaagttactatcgcat
gaaaccatcttagttggccacagtgtcaataacgatctccaagcaatgaaattagactgc
acaagggtgattgacacgtcatatgtcttcaaatacgcaaatcggaccaacagaaaacct
tcactgagtttgttgtgtaaggctttgttaggctatgagcttcggaagggaagtctgcac
aactgtttggatgatgcacgtgccgctatgaagcttgtattggccagattagagggaaag
attgatgatattgtagctgaggaggtaaaagacttggataaggcgaggttgctcatacat
agggtccctgtcaatgtttccgttgaagatttgaagaatgttcttcctggagacttttgt
attgaagtgaaggtaaaaaaaggaaaaacatattcagcctttgctatattcagcactcag
caaaaggcaatcaagacattcgagaatgttgacggtgacctggaaaaggactcgtgtgga
cgagcacaaaagcttgtaaagtttgagcttgattccggaacaactggttcattttatgtt
tgtaaaattgttggtgatgattctgttggcgatgaaataaagaagaggccagcagaagat
gacagtctcgggatagcaaaaaagccaagaacagatgaaacttcgatacagtttgaggat
tctaataaatgctcggatcattgtgaaatgcatctgaaagagatcggaagattggagcaa
gagctaagtcaaagagaaactgaaatatcgagcttgaataaaataattgctgcacttgca
aggaaacaaggactctag
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