Salvia splendens (scarlet sage): 121808025
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Entry
121808025 CDS
T07627
Name
(RefSeq) pre-mRNA-processing protein 40A-like
KO
K12821
pre-mRNA-processing factor 40
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121808025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121808025
Spliceosome [BR:
sspl03041
]
Complex A
U1 snRNP components
U1 related factors
121808025
Complex B
121808025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
121808025
NCBI-ProteinID:
XP_042064298
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All DBs
Position
6:32676154..32688927
Genome browser
AA seq
1007 aa
AA seq
DB search
MASNPPPSGSQPHWSHPASGSMAPQNFAPPYPMQFRPAAQASQGQHFMPQQTTSQFHPSG
QPQNMGMPPGQGQPPQFSQPMQQFMSRPPQPGHVAPSSYPQSMPLPSGMAQPQSTPPGQG
VPYLSSHTYAPSSFGLPQTGINMPPQFQPSSQMPMPVGSTGAQPWMHSNQGTPVVAPLQQ
GSLESLPTTATVPAVNGSSSVQQSASDWQEYDAADGRRYYYNKATKQSSWEKPLELMTPL
ERADASSVWKEFTTPEGRKYYYNKETKQSKWTIPDELKLAREQAEKAAAETSRPEMNASS
APPTVSGASGEQPLAADNLPSSTTPVGAAVGSSPVPSTPVASDAKSPNVMASETGVIPVV
QTPVASTTGVSVGNTVSSSPSDVPVKLSSSRISLENPSSQVGSSPSVGASVRDGEEEKKE
IAVAAKTNVAPIEEKTVDDEPVVYATKQEAKHAFKALLESANVEADWIWDQAMRVIINDK
RYGALKTLGERKQAFNEYLMQRKKIEAEERRLRQRKAKEEFMKMLEESEELTSSTRWSKA
VTMFEDDTRFKAVDLEVDREDLFRNYLVDLQKKEKAKAQEKARRNRLEFRQFLESCDYIK
VDSQWRKVQDLLEDDERCTRLDKIDRLDIFQDYIRDLEKEEEEQKKIQKEQLRRAERKNR
DAFRMMLEEHIAAGTITAKTSWRDYCQKVKDSEAYEAVASNTTGSTPKDLFEDLTEELEK
KYDEDKTQVKDVLKQEKITVASTWTFEDFKSSFGDNTVLSSISDINLQLVYKDLIDRAKE
KEEKEVKKRKRLAKDLTDKLSTIKELNVLSTWEECKSLIEESSEYRSMGEEDLCREVFDE
YISRLQEKMKEKERKREEEKTKKEKEREEKDKRKDKERKEKDKDRDCDREKEKGKDNSRK
DEETTENMDSVESHGYKDDRKREKEKEKKHRKRHQSTADDVSSDKEETKKSRRHGSDRRK
SRKHAYSPESDSESRHKRHRKDHRDGSKRSGDEELEDGELGEDGEIQ
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtaacccgcctccatctggttcacagccacattggtcacatcctgcgtctgga
tccatggctcctcagaattttgctcctccatatcctatgcaattccgtcctgctgcacag
gcatcacaaggccaacattttatgccgcaacaaactacttcacagttccatccatcagga
caaccacaaaatatggggatgcctccaggtcaaggtcaaccacctcaattttctcaacca
atgcaacagtttatgtcacggcctccacaacctggccacgttgctccatcctcgtatcct
caaagtatgcctttgccatcaggcatggcacagcctcagtcaactcctccaggccaggga
gttccatatttgtcatcacatacttatgctccatcttcgtttggcttgccccagacaggc
atcaacatgccaccccagttccaaccttcctcccaaatgcctatgcctgttggttctact
ggggcacaaccgtggatgcactcaaaccaaggtactcctgttgttgcaccactgcagcaa
ggcagcttggaatccttacccaccactgcaactgtaccagctgttaatggttctagttct
gtccaacagtctgcttctgattggcaagaatatgatgctgctgatggcagaaggtattat
tacaacaaggctacaaagcagtctagttgggagaagcctcttgagttgatgacccctcta
gagagagctgatgcatcaagtgtttggaaggaattcactactcctgagggtagaaagtat
tattacaacaaggagacaaaacaatcaaaatggacgatacctgatgaattgaagttggct
cgtgaacaggctgaaaaagctgctgctgagacatcacgtccagaaatgaatgctagctct
gcaccacccacagttagtggtgcttctggtgaacagccacttgcagcggacaacttgcca
agctccactacaccagtaggagctgcagtgggttcgagtcccgtcccatctactccagtt
gcttctgatgctaaatctcccaatgtgatggcctctgaaacaggagtcattcctgtagtg
cagacacctgttgcaagtacaactggagtgtcggtgggaaacacagtgtcatcctcccct
tctgatgttccagttaaattgtcaagctcaaggatcagcttggaaaatccttcatcacaa
gtggggtcaagtccctcggtcggggcttcggtccgagatggagaggaagagaaaaaagaa
attgctgttgcagctaaaacaaatgtggcaccgattgaagagaaaacagtagatgatgaa
cctgtcgtatatgccaccaagcaggaggcgaaacatgcttttaaagcactactagagtct
gcaaatgtggaggcagattggatctgggaccaggctatgagggtgataattaatgacaaa
agatatggtgctctaaaaacgcttggtgaaagaaagcaagcattcaatgagtacttaatg
caaaggaaaaagatagaggccgaggagagacgtctcaggcaaagaaaagcaaaggaggag
tttatgaaaatgttggaagagtccgaagaactcacatcatccacacgatggagcaaagca
gtgacaatgtttgaagatgatacacggttcaaggctgttgacctagaagtggatcgcgag
gatctatttaggaactatcttgtggaccttcagaaaaaggagaaggcaaaggctcaggag
aaggcccgtcgaaacaggctggaatttaggcaatttctggaatcatgtgattatatcaag
gtggatagccagtggcggaaggttcaagatcttctggaagatgatgagcggtgtacccgc
ctagataaaatagatcggctcgacatcttccaggattatattcgtgatttggagaaggag
gaggaagagcagaagaagatacaaaaggaacaacttagaagagctgagcgtaaaaaccgt
gatgcatttcgtatgatgttggaggagcatattgctgctggcactattacagcaaaaact
tcctggcgggattattgtcagaaagtcaaggattctgaggcttatgaggcagttgcatca
aacactactggttccacccccaaagatttgtttgaggatctaacagaagaattggagaaa
aagtatgatgaagacaaaacccaagtaaaggatgttttgaagcaggaaaagattacagtt
gcttcaacatggacatttgaagactttaagtcttcttttggagataatactgttttgtcc
tccatatctgacattaatttgcagctagtatacaaagatcttattgatcgagctaaagag
aaagaagagaaagaggttaagaaacgtaaacgtctagccaaagatttaactgataaattg
agcaccataaaggaattaaatgtgctatctacgtgggaggaatgtaaatcactgattgag
gaaagctcagagtacaggtccatgggagaagaagacctctgcagagaagtatttgatgaa
tatatctctcgtttacaagagaaaatgaaggaaaaggagcgaaagcgagaggaagaaaag
acgaaaaaggagaaagagcgggaggagaaagacaagagaaaagataaagaaagaaaggag
aaagataaagatagggactgtgacagagaaaaggagaaggggaaagataattcaagaaag
gatgaagagactactgaaaatatggattctgtggaatctcatggatacaaagatgacaga
aaacgggaaaaggagaaagagaagaagcataggaagcggcaccagagcacggctgatgat
gtgagttcagataaagaggagacaaagaagtcccgcaggcatggcagtgaccgtagaaag
tcaagaaagcatgcatattcacccgaatcagacagcgaaagccggcataaaagacacaga
aaagatcaccgtgatggatcgaaacggagtggcgacgaggagctggaagatggcgaattg
ggtgaggatggggagatccaatag
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