Salvia splendens (scarlet sage): 121808140
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Entry
121808140 CDS
T07627
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121808140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspl03021
]
121808140
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121808140
Transcription machinery [BR:
sspl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121808140
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
121808140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
121808140
NCBI-ProteinID:
XP_042064443
LinkDB
All DBs
Position
6:complement(7810939..7816940)
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AA seq
686 aa
AA seq
DB search
MDDGDGGLSFDFEGGLDSGPAHPTASVPVIQSALDSNAAAAAANSHNPSAVPHPAAHAAE
GMGGGGARRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVY
KHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLASYNYGNSNKFS
QNRNPIYAQPAEKSQFPQGPNGIHQVGKPGTSEPGNAHQQPQQAQQPQQQGSQVQIQITA
NGQQSQASRSAIPLPQGTSRYFVVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDAVDN
VILIFSVNKTRHFQGCAKMISRIGGSVGGGNWKHAHGTAHYGRNFAVKWLKLCELSFDKT
RHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDSDLMAVSVAAEQKREEEKAKG
VNLDNGSDNPDIVPFEDNEEEEEEESDEEDESPGQAFAGQGRGRGRGMMWPPHMPLARGA
RPFPGMRGFPPNMMGSDGFSYGPVNPDGFPMPDLFGMAPRGFGPYPRFSGDFAGPASGMM
FPGRPPAGGFGMMMGPGRPPFMGGMGVGGAARGSRPGGMPPFYPPPQQQPYQNPGRSKRD
QKAPSSDQNESSDQAKGQDIAGPNDEGRNQQRGKAQQDDHYSGGNSYRNDESESEDEAPR
RSRHGEGKKKRRSMEGDGTAVSLENI
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggatgatggagatgggggtttaagctttgacttcgagggcgggttggattcggggccc
gcgcatccgactgcatccgtgcccgtaatccaatcggcgttggattccaatgcggctgcc
gctgccgccaattctcacaatccttcggcggttccccatccggcggcgcatgcggcggag
gggatgggaggcggcggggcgaggaggagcttcagacagacggtgtgccggcactggctg
cgatctctgtgcatgaaaggcgatgcctgtgggttccttcatcagtacgataagtcgcgg
atgccggtttgccggtttttccgcctctatggggagtgccgtgagcaggattgtgtgtat
aaacatacgaatgaagatatcaaggaatgcaatatgtacaagctaggattttgtccaaat
ggtcctgattgtaggtataggcatgcaaagttgcctggacctccaccccctgtagaagaa
gttcttcagaaaattcagcaattggcttcatataactacggaaactcaaacaaattttct
cagaaccgtaatcctatatatgctcaaccggcagaaaaatctcagtttccacaaggaccc
aatggtatacatcaagtaggaaaacctggtacttcagaacctggtaatgctcatcaacaa
ccacaacaagcacagcagcctcagcagcagggcagccaagttcagatccagattacagcc
aacggccagcaaagccaagctagtaggagtgctatacccctgccccaaggaacttctagg
tactttgtggtgaaaagttgcaacagagagaatctggaactatctgtacaacaaggtgta
tgggcaacacagagaagcaatgaggctaaacttaatgaagcatttgatgctgttgacaat
gtgattttgatcttttcagttaacaagacaagacattttcagggttgtgcaaagatgatt
tccagaattggtggatccgtaggtggagggaactggaagcatgcccatgggactgctcat
tatggacgtaactttgctgtcaaatggttgaagctctgtgaactatccttcgacaaaact
cggcatttgagaaacccatataatgagaacttgccagtaaagatcagtagagactgtcaa
gaactcgagccttctgttggtgagcagttggcatcattgctctaccttgagcctgacagt
gatttgatggctgtctcggttgcggctgagcagaagcgtgaagaggagaaagctaaggga
gtaaaccttgataatggaagtgacaacccagatattgtgccctttgaggacaatgaagaa
gaggaagaagaagaaagtgatgaggaggatgaaagccccgggcaggcttttgcaggtcaa
ggtcggggacgaggtagaggtatgatgtggcctcctcacatgcctcttgctcgtggtgct
cgtccattccccggtatgcgagggttccctccaaacatgatggggagtgatggattctct
tatggtcctgtaaatccagatggtttcccaatgcctgatctctttggcatggcgccccgt
ggcttcggaccgtaccctagattctccggtgattttgcaggtccggcctccgggatgatg
ttcccaggccggccacctgcaggtggattcgggatgatgatgggtcccggacggcctccc
tttatgggaggaatgggcgtcggaggcgcagctagaggcagcaggccgggaggtatgccc
cctttttatccgccaccacagcaacagccttatcaaaacccgggtcgttcgaaaagagat
cagaaagcaccatctagcgatcagaacgagagctctgatcaagccaaggggcaagacatt
gctggacctaatgatgaagggcggaatcagcaaagggggaaagctcagcaagatgatcat
tatagcggtgggaacagctaccggaacgatgagagcgagagcgaagatgaggccccaagg
cggtcgagacacggtgaagggaagaagaagaggcggagcatggagggagatggtacggcc
gtctccctcgagaacatatag
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integrated database retrieval system
