Salvia splendens (scarlet sage): 121808461
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Entry
121808461 CDS
T07627
Name
(RefSeq) pinin-like
KO
K13114
pinin
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03013
Nucleocytoplasmic transport
sspl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121808461
03015 mRNA surveillance pathway
121808461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121808461
03041 Spliceosome [BR:
sspl03041
]
121808461
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121808461
Spliceosome [BR:
sspl03041
]
Complex C
Other components
EJC/TREX
121808461
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
121808461
NCBI-ProteinID:
XP_042064905
LinkDB
All DBs
Position
6:complement(32252657..32256724)
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AA seq
422 aa
AA seq
DB search
MASTVVAEKTEAELRKEIDELRCQQREITERLRDPRGIRRGGLTGAGPRNFAANGNRQRG
FVRPADRNDADDQPPAKRRLSSAVVKVEDGEIIEGGPEAGIDVEEKEVALDTGDAVNTNG
RQGERKASNWSQRVGSQQPSKMDFETPPAEHVPRVLPKDEDPSSVSRNKRMLGQLLGTLE
RFRKEDVKLSGTEAYMRRSDSLKRAEQRAREESEKLRLQEREQIAEKRKRDLTLRARIAA
KAEEKNMELLFLRWSEHHKKLGNFIRTKAEPPIYYSFAKPLDQDPTLIEQQKEKMFQEWK
SARREELSQYQKQILDQYVANVDKELERWQNGRKGRRPNNSVANLQETMDKELETHQLEH
GPKNRKIPGQSNNEDEDDVEDINVAEDDMMDDVLGVDDNGGRVDETEKLETANIPPEDKK
DG
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atggccagcacggtggtggccgagaagacagaggcagagcttcggaaagaaatcgatgaa
ctccgctgccaacagcgggagattacagagcggctacgagatcccaggggtattcgccgc
ggtggcttaacgggtgccggaccacgcaattttgccgccaatggcaaccggcaacgtggc
tttgttcgacctgcggacaggaatgatgctgacgaccagcctccagcaaaaaggcgactc
tcttcagctgttgtgaaggttgaggatggggagattatcgaaggtggtcctgaagctggg
attgacgtggaagagaaagaagtagcacttgatacaggagatgctgtaaataccaatgga
aggcagggtgagagaaaggcctctaattggtctcagagggttggtagtcagcagccgtcg
aaaatggattttgaaacacctcctgctgaacacgtgccaagggtgttgcctaaggatgag
gaccctagttcggtcagcaggaataagaggatgcttggccagcttcttggtacattagag
aggttcaggaaagaggacgtgaaactatccggcacggaggcatacatgagaagatctgat
tctctgaaaagggctgagcaacgggcacgtgaagaaagtgaaaaactgaggctacaagag
cgtgaacagattgcggaaaagcgaaagagagatttgaccctcagagcacgtatagctgca
aaggcagaggaaaagaatatggaattgctgtttcttcggtggagtgagcaccataaaaaa
cttggaaatttcataaggactaaggctgaacctccgatctattactcgtttgccaagcct
ctggatcaggatccaactttgattgagcagcagaaagaaaaaatgtttcaagagtggaaa
tctgctaggagagaggaactgtcgcaatatcagaaacaaattttggaccagtatgttgca
aatgtggacaaggaactggaaaggtggcaaaacgggaggaaaggtagaaggccaaataac
agtgtggcaaacttacaggagacaatggacaaagagctagagacccatcagcttgagcat
ggtcccaagaatagaaaaatacctggccaaagtaacaatgaagatgaagatgacgtggaa
gatataaatgtggcagaggatgatatgatggatgatgtgctgggtgtcgatgataatggg
ggaagggttgatgaaactgagaaactagaaacagctaatattccacccgaggacaagaag
gatggatga
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