Salvia splendens (scarlet sage): 121808503
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Entry
121808503 CDS
T07627
Name
(RefSeq) WD-40 repeat-containing protein MSI4-like
KO
K10752
histone-binding protein RBBP4
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03082
ATP-dependent chromatin remodeling
sspl03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121808503
03083 Polycomb repressive complex
121808503
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sspl03036
]
121808503
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
121808503
Histone modification proteins
HAT complexes
HATB complex
121808503
HDAC complexes
Sin3A-HDAC complex
121808503
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
121808503
PRC2.2
121808503
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
121808503
Heterochromatin formation proteins
Other heterochromatin formation proteins
121808503
Chromatin remodeling factors
NuRD complex
121808503
NuRF complex
121808503
NuRF complex (fruit fly)
121808503
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
CAF1C_H4-bd
WD40_Prp19
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
WD40_WDHD1_1st
WDR55
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT122_1st
WD40_RFWD3
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_DCAF12
Beta-prop_SPT8
Beta-prop_WDR35_TULP_N
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
121808503
NCBI-ProteinID:
XP_042064967
LinkDB
All DBs
Position
6:complement(13202347..13210275)
Genome browser
AA seq
494 aa
AA seq
DB search
METTPPPTEPRKRGRPKGSTKAKADKDKDAASAGTTPSRMRGSAGDKRNSAVDEGYAHWK
QLVPVLYDWLASHNLVWPSLSCRWGPVLERGTYKTKQRLYLSEQTDHTQPNTLIIANCEV
VRPRVAAESHIANFNEDARSPYVKKYKTILHPGEVNRIRELPQNKNIIATHTDCPEVLIW
DVEAQPNRHAVLGAADSRPDLVLSGHQDNAEFALAMCPAEPFVLSGGKDKSVVLWSIQDH
VSTLASDGTQSAESASSIVKAADNSTVGPRGIFQGHTDTVEDVQFCPSSSQQFCSVGDDS
CLILWDARIGSDPVVKVEKAHNADLHCVDWNSHDENYILTGSADNTVCMFDRRNITANGI
GSPVHKFAGHKAAVLCVQWSPDKCSVFGSSAEDGLLNIWDYEKVGQKDTGSKSPGTPAGL
FFQHAGHRDKVVDFHWNAHDPWTIVSVSDDGEFSGGGGTLQMWRMTDLLYRPKDEVLTEL
QKFKDHVIECSKTS
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccactccgcctcccaccgagcccaggaagcgcggcaggccgaagggatccacc
aaggccaaggccgacaaggacaaagacgctgcctccgccggcactactccctcccgaatg
agaggctctgccggtgacaagaggaactccgccgttgacgagggttacgcccactggaag
caactcgtccccgtgctttatgactggctcgcctctcacaatcttgtctggccctctctc
tcctgccgctggggtcctgttcttgagcgaggaacttacaagaccaaacaacgcctttac
ctgtctgaacagaccgaccatacgcagccgaacaccttgatcatagcaaattgtgaggtt
gtcaggccacgtgttgctgcagaaagtcatatagccaatttcaatgaagatgcacgctcg
ccatatgtaaagaagtacaaaactatattacatccaggagaggtgaacagaatcagggag
ctgccccagaacaaaaatataatagctacacacactgattgtcctgaagttctcatttgg
gatgttgaggcgcaacctaatcggcatgctgttcttggggctgcagattctcgcccagat
ctggtcttatctggacaccaagacaatgcagaatttgctcttgcaatgtgcccagccgaa
ccctttgtgctctctggagggaaggataaatctgttgtgctgtggagtatccaggatcat
gtttcgacacttgccagcgatggaactcagtctgcagaatctgctagttcaattgtaaag
gctgctgataattctacagttggcccacgtggaatcttccaaggccacactgatactgtt
gaggatgtccagttttgtccatcaagctctcagcaattttgtagtgttggagatgattct
tgtttgatactgtgggacgcaaggattggaagcgatccggttgttaaggtcgagaaggca
cacaatgctgatcttcattgcgtagattggaactctcacgatgagaattatattctaact
gggtctgctgataatacagtttgcatgtttgaccgccgtaacataacagccaatggaata
ggatctcctgttcataaatttgcaggtcacaaagcagctgttctttgtgtccagtggtca
cctgacaaatgctctgtatttgggagctcggcagaagatggcttgctaaatatctgggac
tatgagaaggttggtcaaaaggacacagggtcgaaatcccctggtactccagcagggttg
tttttccaacatgctgggcacagggataaggttgttgacttccactggaatgctcatgat
ccgtggacgattgttagcgtatctgatgatggggaattctccggtgggggtggtactctg
cagatgtggcgtatgactgatcttctgtaccgtcccaaagatgaagttctgaccgagctt
cagaaattcaaagaccatgtgattgagtgctccaagacttcttga
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