Salvia splendens (scarlet sage): 121808655
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Entry
121808655 CDS
T07627
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB4-like isoform X1
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03022
Basal transcription factors
sspl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121808655
09124 Replication and repair
03420 Nucleotide excision repair
121808655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspl03021
]
121808655
03400 DNA repair and recombination proteins [BR:
sspl03400
]
121808655
Transcription machinery [BR:
sspl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
121808655
DNA repair and recombination proteins [BR:
sspl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
121808655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
121808655
NCBI-ProteinID:
XP_042065182
LinkDB
All DBs
Position
6:16717624..16721760
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AA seq
293 aa
AA seq
DB search
MTPVSSKLYADDVSLLMVLIDTNPFFWNSAQSTLPFSKFLTHVLAFLNSILLLNQMNQVV
VIAAGYNSCGYIFDSSDPQNQNKRAEDLLHKLEEFVDNDQELCREESVDGPGFSLLSGSL
SMALCYIQRVFRTVPLHPQPRILCLHGSPDGPGQYVAIMNSIFSAQRSMVPIDSCVLGAQ
HSAFLQQASYITGGVYLKPQIFDGLFQYLSTVFATDLHSRYFLQLPKPAGVDFRASCFCH
KNTIDMGYICSVCLSIFCKHQKKCSTCGSVFGQAQTQNSSTTPDRKMKMPVDG
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgactcctgtctcatccaagctttatgcagatgatgtgagtctgttaatggtgctaatt
gacacgaacccattcttttggaactcggctcaatccacgctacccttctccaagttcttg
actcatgtacttgcatttttgaattctatacttctgctgaatcagatgaatcaagtggtt
gtcattgcagctggttataattcttgtggttacatatttgattcatcagacccacagaac
caaaataaacgggcagaggatttactgcataaattggaggaatttgtggacaatgaccag
gaactctgtcgtgaagagtctgtggatggcccagggttctcactgctatctggttccctc
tcaatggcgctttgctatattcagagggtctttcgaacagtgccacttcatcctcagcca
cggatattatgcttacatggatctccagatggacctggacaatatgtagctatcatgaat
tcaattttctctgctcagcgatcaatggttcctatagattcatgcgtgctgggagctcaa
cactctgctttcctgcagcaggcttcttatataactggtggtgtatatctgaagccgcag
atattcgacggcctgtttcagtatctttcgactgtgtttgctactgatttgcattctcgt
tactttttacaacttcctaagcctgctggagtagactttcgtgcatcgtgtttctgccac
aaaaacacaattgatatgggctacatttgttcggtttgtttatctatattctgcaagcat
cagaagaaatgttcaacctgcggatctgtgttcggtcaggcccaaacacagaactcctcg
acaacaccggacaggaagatgaagatgccggttgacggttag
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integrated database retrieval system
