Salvia splendens (scarlet sage): 121808658
Help
Entry
121808658 CDS
T07627
Name
(RefSeq) E3 ubiquitin protein ligase RIN2-like
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121808658
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sspl04121
]
121808658
Enzymes [BR:
sspl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
121808658
Ubiquitin system [BR:
sspl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121808658
Multi subunit type E3
ERAD complex
121808658
LMBR1L-GP78-UBAC2 complex
121808658
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
CUE
zf-C3HC4
zf-rbx1
zf-RING_UBOX
zf-RING_11
zf-ANAPC11
zf-RING_5
zf-C3HC4_2
zf-C3HC4_3
U-box_ZFPL1
zf-C3HC4_4
zf-RING_16
zf-RING_Vps41
zf_RING_Vps8_fungal
PHD
Motif
Other DBs
NCBI-GeneID:
121808658
NCBI-ProteinID:
XP_042065187
LinkDB
All DBs
Position
6:complement(35863841..35870499)
Genome browser
AA seq
569 aa
AA seq
DB search
MGVNFLSVSVACTILSLVGVQYWTEISLAKHQSDVLIVNELINSENATHTLELLFGSYTT
LLLVSSLAVNVIVLLILGLKTVFFSELYTSEIRKMLERLVNYIIYKGTFLPLVVPPTIFQ
AGLWSTWLAMLCFLKMFQALARDRLERLNASPSVTPWTYFRVYSALLLVFSVDLLWILLC
ATIYSAMPSSIFLLLFFEPSSIAFETLQAIAVHGFQLLDIWMHHSAGDAANSQLSKISAG
SLGEWKVMVIRNFGFFLDMMTLLMALAHYLYIWWLHGMAFHLIDAVLFLNIRALLSAIVK
RVKGFVKLRMALGTLHGALPDATSEELKAYDDECAICREPMAKAKRLSCSHLFHLACLRS
WLDQCLSESYSCPTCRKPLFTNRSESTVNPNAADLSRDEQLAHQISTALNGPDLPGHNLH
PGVFTNQPQNLEMSDWRRTGVNLSWLGLDGAGPSGLNRVQMLMRQLDVGETYAHSTLEDA
AWSLFPPNPSQIGTSRSPIPPAASTRYPGGTSGLHVRPTSNAASTNFENIIAMAETVREV
LPHVPDDVIFQDLQLTNSAMATVNNLLQM
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtcaacttcttatccgtttctgtagcctgtaccattctgagcctggttggcgtt
cagtactggacagaaatctcacttgcaaagcatcaatcagatgttttgattgtaaatgaa
cttatcaattcagaaaatgcaacccatactcttgagcttctttttggttcatacacgacc
cttctgctggtttccagtttggcagttaatgtcattgtcctgttaatcttaggcctaaag
acagtattcttttcggagttgtatacatctgaaatccgaaaaatgcttgaaaggctcgtg
aattacatcatctacaagggaacttttcttccattggtagtcccaccaacaatatttcaa
gcaggtctatggtcaacttggttagccatgctttgcttcttaaagatgtttcaagcttta
gctagggatcggcttgaacgtttgaatgcttcaccttctgtcaccccatggacatacttc
cgtgtatattctgctttgttgcttgttttctctgttgacttgctctggatattgctatgt
gcgacaatctacagtgcaatgccttcatcaatatttttgttgttattttttgagccgtct
agcatagcttttgagacactgcaggccattgcagtccatgggtttcagttgctcgatata
tggatgcatcactccgcaggagatgctgcaaattcacaattatctaaaatctccgcaggt
tcactgggggaatggaaagtcatggttattcggaattttggatttttccttgacatgatg
acgttgctaatggctcttgctcactacctatatatttggtggcttcatggcatggcattt
catcttatagatgcagtccttttcctaaatatccgtgcccttctaagtgctattgtgaag
cgtgtaaaaggttttgtcaaactgcgtatggctttgggaacccttcatggggcactacct
gatgccacatctgaagagctcaaagcatatgatgatgagtgcgcaatttgtagggaaccg
atggcaaaagctaagaggctgtcttgtagtcatttattccatctcgcatgtttgagatct
tggttggatcaatgtttaagtgagagttactcatgccccacttgtcgcaaaccactcttt
acaaacagatctgaaagtactgtaaatccaaatgctgcagatttgtctagagatgagcaa
cttgctcatcagattagtactgcactcaatgggcctgatcttcccggtcataacctgcac
ccgggagtctttaccaaccagccacagaacctagaaatgagtgattggaggaggacgggt
gtaaatttaagttggttgggtttagatggagctggcccatctggattaaatcgtgttcag
atgttaatgaggcaacttgacgttggagaaacttatgcacatagtacgctcgaagatgct
gcatggagtctgtttcctccgaacccgtctcagattggtacctcaagatcaccaatccct
cctgctgcctcaacaagatatcccggaggcactagtggtttgcatgtgaggccaacatct
aatgctgccagcaccaactttgaaaacatcattgcaatggccgaaacagtcagagaagtg
ctgcctcacgttccagacgatgtaatctttcaggatttgcagctgacaaattccgcgatg
gccactgtgaataatcttttgcaaatgtga
DBGET
integrated database retrieval system
