Salvia splendens (scarlet sage): 121808754
Help
Entry
121808754 CDS
T07627
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
sspl
Salvia splendens (scarlet sage)
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121808754
03036 Chromosome and associated proteins [BR:
sspl03036
]
121808754
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
121808754
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
121808754
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
121808754
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
ResIII
AAA_19
UvrD-helicase
AAA_16
DEAD
PhoH
PIF1
AAA_22
SLFN-g3_helicase
IL3Ra_N
Motif
Other DBs
NCBI-GeneID:
121808754
NCBI-ProteinID:
XP_042065274
LinkDB
All DBs
Position
1:complement(3520063..3525779)
Genome browser
AA seq
973 aa
AA seq
DB search
MGTIHDKSDDEYSYVGDKGDIGFIDFDNCQSVCSYNPADESEIVNISVPFPLIEGRKPQS
GILGETMFDSVTIRNTTDESLDLWSVKIFDSKPEDSFKISLMKPPTADSDMEYIQDYMEL
VALDDRVIRPNQALTIWLSCKPKEIGVHSAAIHFSVGDEVIERLLFLLAEDSISKSLSST
RQYQRPQRKNRNIANQHAPDAAYVAARRPAGAGGRGRGRGPGRVFRYHLPEYPIPAEIRA
MLSRHEIPDPVVEGLTAKNYGAFFKNLLAMEEIKLEEDMQSYYMEDVTMKSKRGQMLSLE
VPGLAEKRPSLVSGDFIFAELASDGETSSPRYQGYIHRVEAEEILLKFDQQFHRSHRDGN
LYNVEFNYNRTNMRRLYQAIEVAQSLERNFLFPSAMSKVRLGKYKALTPICSDLNEEQKM
AVNMIVVRKGGPPYVIHGPPGTGKTKTLIEAILQIYREDRHARILACAPSNSAADHILDR
LINEEAVQVQEQEIFRLNAYTRPFDDVNPSHINFCHHEDFIFVCPPCKVLEQYRIIVSTY
ASASILYSAGIQRGQFSYIFLDEAGQASEPEAMVPISHLYSRNTVLVLAGDPMQLGPVVF
SREAEENGLGTSYLERLFECELYRRGDTSFMTKLVRNYRTHEAILKLPSEMFYAGELIPC
GDKNSSTSWEGIIPDKEFPLLFIGIQGCDEREGNNPSWFNRIEASKTVEMIKVLIEEKGL
KEEEIGVIAPYRKQVSKIKEALECLGNTNVKVGSVEQFQGQERKVIIVSTVRSTVKHNEF
DKVHYLGFLSNPRRFNVAVTRAKSLIIIIGNPHIICKDPNWNKLLWYCVENNSYKGCFLP
KEEEESAQVEEAYQGNWVEYDQPSGSQWDENYQPSGSNWDEHGSGWKQDQWGEDGGWNQP
SEVPCGEEENINLRPSEVPCGEEENINLQSSDAPRVDGTNLQPYDAHQADVTNIKPLDVP
FKDFHINNDVPWE
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atgggaacaatccacgataaatcagatgatgagtactcttatgttggagataaaggggac
ataggattcattgactttgataattgtcaatctgtctgtagctacaaccctgctgatgag
agtgaaattgtcaacatatctgtcccgtttcctctcattgaaggacgaaaacctcaatct
ggaatcttaggagaaacgatgtttgattcagttacaataagaaacaccaccgacgagtcc
ttagatctgtggtctgtgaagatttttgactccaaacctgaggattcatttaagatttcg
ttaatgaagcctccaacagctgattctgatatggaatatatccaagattatatggaactg
gtagcgttagacgacagagtgattagaccaaatcaggctttgactatttggctatcatgc
aaaccgaaggaaataggcgtgcactcggccgctatacacttcagtgttggcgacgaggtg
atagaacgtctcctttttctgctggcagaagatagcatctccaagtctttgtcatctaca
agacaataccaaagacctcagagaaagaaccgtaacatcgccaatcagcatgcacctgac
gctgcatatgttgcagcacgacgtcctgctggagctgggggtcggggtcggggtcggggt
ccaggtcgcgtgttcagatatcatctgcccgagtatcctattccagcggaaatccgtgcc
atgttaagcagacatgagattcctgatccagtcgttgaggggctaacagcaaagaattat
ggtgcattcttcaagaatctattagctatggaggagattaagttggaggaagatatgcag
tcgtattacatggaggatgtcaccatgaagagcaagagaggccagatgttgtctcttgag
gttccaggattggctgagaaaaggccttcacttgttagtggcgacttcatatttgccgag
cttgcttctgatggtgaaacatcaagtcctcgatatcagggctacatccatcgagtagaa
gccgaagaaatactgttgaaatttgatcaacaatttcaccgtagtcacagagatggtaac
ctctacaatgtagagtttaactataaccggacaaatatgcggcggttgtatcaagctatt
gaagttgctcaatctttagaaaggaactttctgttcccatctgcaatgtccaaagtgaga
ctggggaaatacaaagcactaacacctatatgttccgacctgaatgaggagcaaaagatg
gctgttaacatgatcgttgtccgtaaaggaggccctccatatgtcatccatggccccccg
ggtacgggcaaaacaaagactcttattgaagctatccttcaaatttaccgtgaagataga
catgcccgtattctagcctgtgcaccttcaaatagcgcagctgaccatatactggatagg
ctgatcaatgaggaagcagttcaggttcaggagcaggagatcttccggcttaatgcatac
acacgtccttttgatgatgtcaaccccagtcacatcaatttttgccatcacgaggatttc
atctttgtgtgtcctccgtgcaaagtcctggagcagtataggattattgtatctacgtat
gcgagtgcctcgattctatattctgcaggcattcagagaggtcagttttcctacattttc
ctagacgaggctggtcaagcttccgagccagaagccatggttcctatatctcatctgtac
tcaagaaatactgtattggttctcgcgggagatcctatgcagctggggcctgtagttttc
tctagagaagctgaagaaaatggacttggtacttcatatctggagagactttttgagtgt
gaactctatcgtagaggagatactagttttatgacgaagttggtaagaaactatcggaca
cacgaggcaatactgaaactcccctcagaaatgttttatgccggagaattgatcccatgt
ggggacaaaaattcctcaacttcctgggaaggcataattccggataaggagtttccttta
ctttttataggcattcaaggctgtgacgaaagagaaggaaataatccatcttggttcaac
agaatagaagcaagcaagactgtggagatgattaaagttttgatagaggaaaaagggctt
aaagaagaagagattggggttattgcaccttataggaagcaggtaagcaagataaaagaa
gctctagaatgtcttggtaatacgaatgttaaagtcggaagtgtcgaacagttccaggga
caagaaaggaaagttattatagtatctactgtccgttcgactgtcaaacacaatgagttt
gacaaggttcattatttgggatttcttagcaacccaaggaggtttaatgttgctgttacg
cgagccaaatctttgatcataattattgggaatcctcacataatttgcaaggatccaaac
tggaacaagctcttgtggtattgtgtggaaaataactcttacaaaggttgcttccttcct
aaagaagaggaagagtctgcacaggtggaggaagcataccagggtaattgggttgaatat
gatcagccatctggatctcaatgggatgaaaattatcagccatcaggatctaattgggat
gaacatggaagtggatggaagcaagatcaatggggcgaagacggtggctggaatcaacca
tctgaagttccttgtggtgaagaagaaaacatcaatctcaggccatctgaggttccttgt
ggtgaagaagaaaacatcaatctccagtcatctgatgctcctcgggtcgatggaaccaat
ctccagccatatgatgcccatcaggccgatgtaaccaacatcaagcctttggatgttcct
tttaaggactttcacataaacaatgatgtaccatgggagtga
DBGET
integrated database retrieval system
