Salvia splendens (scarlet sage): 121808992
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Entry
121808992 CDS
T07627
Name
(RefSeq) lys-63-specific deubiquitinase BRCC36-like
KO
K11864
BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121808992
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
sspl01002
]
121808992
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sspl04121
]
121808992
03036 Chromosome and associated proteins [BR:
sspl03036
]
121808992
03400 DNA repair and recombination proteins [BR:
sspl03400
]
121808992
Peptidases and inhibitors [BR:
sspl01002
]
Metallo peptidases
Family M67
121808992
Ubiquitin system [BR:
sspl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
121808992
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
121808992
BRISC complex
121808992
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
BRISC complex
121808992
DNA repair and recombination proteins [BR:
sspl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
121808992
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCC36_C
JAB
Prok-JAB
UPF0172
LTXXQ
Motif
Other DBs
NCBI-GeneID:
121808992
NCBI-ProteinID:
XP_042065478
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All DBs
Position
6:34505422..34510694
Genome browser
AA seq
427 aa
AA seq
DB search
MSLTSVKMSEDVWLTCLTHALSTETEEIMGLLLGDIQSTKNGVTALIWEALPQPRSDRQK
DRVETNPEQLTAASVHAERMTMATGTTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDP
GFIGLIFSCFSEDAQKVGRIQVIAFQSMDGKQGHMMQPLSLTPVQKSSIIDLESSMSSSD
NAIAVFGSSKGETMEQDTGDSEAAGRVSKGSGKSPRLGGFLANANAKTGNNSHANSLNDA
INGLDPMDMTEGMQEAMHLSTLEMSGAEYIRKEIPLHVLPTSSLLSIDSPSSSFTYLQRV
LYEEEKTAYNQAMAQNTRDGKVHPLSFIHHTATYKSSMCKMIEYCLSPAMTVLQDRLREN
EIQLNLLVEEANLLESEVSKGSPTNSSPRSPSQGHRSSTSGHRDLYPTDLSQVKNVGGSR
SRRGSQS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgtctctaacgagcgtgaagatgtcggaggatgtgtggttgacgtgcctgacccatgca
ttgtccactgagactgaggagatcatgggccttcttcttggtgatattcagagtacaaag
aatggtgtaactgcattgatctgggaagcacttccacaaccacgttctgatcgacaaaag
gatagagttgagactaacccagagcagctgactgctgcatcagttcatgctgagagaatg
acaatggcaacgggaactacaactagggtgattggctggtatcactcgcaccctcatatc
acagtcctaccatctcatgttgatgtgcggactcaagcaatgtatcagctattggatcct
gggtttattggtttgattttttcctgtttcagtgaagatgctcaaaaggtcggaaggatt
caagtcattgcatttcagtctatggatgggaagcagggtcacatgatgcaacctctttct
ctcactcccgttcaaaaaagttctataatagatttagagtcttccatgagttcttcagac
aatgcaattgctgtgtttggctcttccaaaggagaaactatggaacaagacactggagat
tcggaggcagctggtagggtttctaagggctcagggaaatcaccacgtttgggaggtttt
ttggctaatgctaatgctaaaacaggaaacaatagccatgctaacagtttgaatgatgcg
attaatggtttggatcccatggatatgactgaaggtatgcaagaagcgatgcatttgtca
actttggagatgagtggtgccgaatacatcagaaaggaaattcctcttcatgttctccct
acatcatcccttctgagtatcgattctccttcgtcatcctttacatatctccaacgggta
ctgtatgaagaagagaagactgcatataatcaagccatggcacaaaacacaagggatggc
aaagttcaccccctctctttcattcatcacacagccacatacaagtcgtccatgtgcaaa
atgattgagtactgcttgagtcctgctatgactgttcttcaagatcgcttgagagaaaac
gaaattcagttaaatctgcttgtggaagaagccaatctactggaatcagaggtctcaaaa
ggaagccccacaaattcgtctcctcgctctccatctcaggggcaccggagtagtacctcc
ggtcacagggacttgtatccgacggacttgagccaggtgaaaaatgtgggtggtagccgg
agccgaagagggtcccagtcgtga
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