Salvia splendens (scarlet sage): 121809090
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Entry
121809090 CDS
T07627
Name
(RefSeq) nuclear pore complex protein NUP62-like
KO
K14306
nuclear pore complex protein Nup62
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121809090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121809090
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121809090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nsp1_C
Nucleoporin_FG
APG6_N
Prefoldin_2
COG3_N
V-SNARE
Motif
Other DBs
NCBI-GeneID:
121809090
NCBI-ProteinID:
XP_042065572
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All DBs
Position
1:4157476..4162422
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AA seq
781 aa
AA seq
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MAGTGFSFSSSSAPAFGTSSPAFGTASGASFGFGTATTSSSSSTPSFGFASNPSSASYAN
SFGFGSGAASSGSSLFGGSAAATGSNIFGSAPTGAPASGVFGLSSASTGQTANAFGSSTP
TPAPSTPTPSTSPFGAQSPFGSPAPGSNLFGSGAPTPSLFGNTSSSASNTGSLFGSGASA
TPNPFGSTTASSAPAFGSGLALNSGLFGSSTSAPSTATTAPQFGVSSVSTGIFGSSTPAS
TGGNPPSLFGANSGSSPSLFGSSSASASPLGVAPSTTSSSSASHVSGFSFPSSVASTSAF
SISSSAASAPGFSFPSASASVSAAPGLSIPSSPATSAPAFSFNTASSTTSSGFSFLKSTT
STASSGSATTSVSSSPGFSFASAPSLSSSSASTSLFSTVTTTTATSASAPSVSSASSGLT
FPALTVPASGTSASAPTSGFTGFGTTSTPASGTSASAPTSGFTGFGTTSTSASGTSASAP
TSGFTGFGTTSMPASSSGSASSFSLSLKTPATTASLASQAQSSVALPSFGVTAASSTTTA
SSSTSSAAQASSVLVAAASSGAALATSTAPASTPKLPSEITGKTVEEIIKEWNGELQERT
GKFRKQANAIAEWDRRILQNRDILLGLETEVAKVVETQGSLERQLELIETHQDEVDKALQ
SMEEEAERLYKEERGMLLDDDAASTRDAMYEQAELIERGLEQMTEQIKTVINSLNASQGG
ELEATDGMNPLDVVVRILNNQLSSLMWIDEKAEEFSSRIQKLASHGSTADRELTGPKLWL
N
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atggccggcacaggattctcattctcctcctcctccgcacctgccttcggaacctcatcg
cctgcttttggcaccgcctccggagcctcatttggctttggcaccgcaacgacctcctcc
tcctcctccacaccttcttttggctttgcctccaaccctagctccgcctcctacgcaaat
tcttttggttttggatcgggagcagcgtcgtctggctcatctctgttcggcggttccgcc
gcggccactggctccaacatttttggatcagctcctactggagctccggcttctggcgtt
ttcggattatcgtctgcaagcacaggccaaacagctaatgcatttggttcttcgactcca
actcccgctccatcaacccccacgccttccacatctccgtttggcgcccaatctccattc
ggatcccctgcccccggatccaaccttttcgggtcgggtgctccaactcccagtctattt
ggtaatacttcttcttccgcgagcaataccggctctctttttgggtcaggggctagtgca
acacctaatccttttggatcaactacggcctccagtgccccggcatttgggtcgggcctg
gcactgaactcagggctatttggctcgtcgacatcggctccatccactgccactacggcc
ccacaatttggggtaagttccgtgtctacgggcatatttggatcctcaaccccagcttct
accggtggcaatcctccatccttgtttggggcaaattctggatcatctccaagtcttttt
ggatcatcttcagcttcggcttctccattgggtgtggcgccgtcgaccacttcttcaagt
tcagcttcccatgtttctggattttcattccccagttcggttgcttcgacttcagcattc
tccatttcaagttcagctgcgtcagcacccgggttctcattccccagtgcatcggcttca
gtctctgccgcgcctggtctttctattccctcatcaccagccacgtctgctcctgcattt
tcatttaatacagcttctagcaccacttcttctggcttttcgtttttgaagagtaccact
agcactgcctcctcaggttcggccacaacgtctgtatcttcttcacctggtttttcattt
gcttctgcaccatctctttcgagttcttcagcctcgacatctctcttttcaactgtcaca
acaactaccgcaaccagtgcatcagctccaagtgtgtcttctgctagttctggtttgacg
tttccagcattgacagtgcctgcatcggggacgagtgcatctgctccaacttcagggttt
acaggtttcggcacaactagtacgcctgcatcagggaccagtgcatctgctccaacttca
ggatttactggtttcggcacaactagtacgtctgcatcagggaccagtgcatctgctcca
acttccgggtttactggtttcggcacaactagtatgcctgcatcatcctctggaagcgca
agttctttctcactatctttgaaaacaccagcaaccacagcctcacttgcatcacaagca
cagtcaagcgttgcactgccttcttttggtgttacagctgcgagctcaacaacgacagcg
agctcaagtaccagttctgctgctcaagcatcatctgttcttgttgcagctgccagtagt
ggggctgctctagccactagtacagcaccagcatctacgccaaagttaccatccgaaatt
actgggaaaacagtcgaggagatcattaaagagtggaatggggaactgcaggagcgtact
gggaagtttaggaaacaagctaatgctatagctgagtgggatcgcaggattctacagaat
cgtgacattcttcttgggcttgagactgaagttgcaaaggtagttgaaacacaaggtagt
ctggagcggcagctggaactaattgaaactcaccaagatgaggttgacaaagccctgcaa
agcatggaggaggaagctgagcgactgtataaagaggagcgtggaatgcttcttgatgat
gatgctgcatctacacgagatgcaatgtatgagcaggctgaactcatagagcggggattg
gagcagatgacagagcagatcaaaacagttataaacagtcttaatgccagtcaaggtgga
gagcttgaggcaacagacggaatgaatcccctagatgttgttgtccgcatattaaacaat
caactgagttcattgatgtggattgatgagaaggccgaggagttctcttcacgtattcag
aagcttgctagccatggctctactgctgatcgtgaactgactggccctaagctgtggttg
aactga
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