KEGG   Salvia splendens (scarlet sage): 121809399
Entry
121809399         CDS       T07627                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
  KO
K12857  Prp8 binding protein
Organism
sspl  Salvia splendens (scarlet sage)
Pathway
sspl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sspl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    121809399
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sspl03041]
    121809399
Spliceosome [BR:sspl03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    121809399
 Complex C
   U5 SnRNP specific factors
    121809399
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_EML_2 WD40_WDHD1_1st WDR55 Beta-prop_CAF1B_HIR1 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_EML Beta-prop_EIPR1 NBCH_WD40 Beta-prop_SPT8 WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 ANAPC4_WD40 Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_WDR35_TULP_N WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_SCAP Beta-prop_WDR19_1st eIF2A Beta-prop_HPS5 Beta-prop_DCAF12 Beta-prop_RIG_1st Beta-prop_Nup120_160 Cytochrom_D1
Other DBs
NCBI-GeneID: 121809399
NCBI-ProteinID: XP_042065928
LinkDB
Position
6:complement(2038781..2040742)
AA seq 341 aa
MQVESALSVVGPKPTELSTFTHSFGPPGAGPNGKQRTSSLEAPIMLLAGHQSAVYSMKFN
PAGTVIASGSHDRDIFLWNVHGDCKNFMVLRGHKNAVLDVQWNTDGSQIISTSPDKTLRA
WDVETGKQIKKMVGHLFVVNSCCPARRGPPLIVSGSDDGTAKLWDMRQRGSIQSFPDKYQ
ITAVSFSDASDKIYTGGIDNDVKVWDLRRTDPVMKLQGHHDMITGMQLSPDGSYLLTNSM
DCSLRIWDMRPYAPQNRCVKILEGHQQNFEKNLLRCSWSPDGSKVTAGSSDCMVYVWDTT
SRRILYKLPGHTGSVNECVFHPNEPIIGSCSSDKQIYLGEI
NT seq 1026 nt   +upstreamnt  +downstreamnt
atgcaagtcgaaagtgctctttctgtggttggtccaaagccaacagagttgtcaactttc
acacacagctttggcccacctggggctggtcccaatgggaaacagcggacatcgagctta
gaagcacctataatgttactggctgggcatcaaagtgcagtctactcaatgaagtttaat
cctgccgggactgtcattgcatctgggtcgcatgacagggatatctttttgtggaatgtg
cacggagattgcaaaaactttatggtcttgagagggcacaagaatgctgtcttggatgtc
cagtggaatactgatggttcgcagataatatcaacaagccctgataaaactttaagggca
tgggatgttgagactggtaaacagattaagaagatggttgggcacttgtttgttgtgaac
tcgtgttgccctgctcggaggggccctcctcttattgtcagcggatcggatgatggaact
gccaaactttgggatatgcgtcaaaggggttccattcagagtttcccagacaaataccag
atcacagcagtcagtttttctgatgcatctgataagatttacaccggtggcatcgacaat
gatgtcaaggtatgggatttacgaagaactgatcctgttatgaagcttcaaggacatcat
gatatgattactggtatgcagctgagtccagatgggtcttaccttctaacaaacagcatg
gattgctcccttcgaatatgggatatgcggccatatgcccctcagaatcgctgcgtgaag
attcttgaagggcatcaacaaaattttgagaagaacctgctgaggtgtagctggtcacct
gatggaagcaaagttactgctggtagtagcgactgcatggtatacgtatgggacactact
tcaagacgcatactgtacaagctccctggccatactgggtcagtgaatgaatgcgtcttt
catcccaatgaacctataatcgggtcttgcagcagcgacaagcagatatatcttggtgaa
atttag

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